Author: bugman
Date: Fri Nov 8 11:09:31 2013
New Revision: 21405
URL: http://svn.gna.org/viewcvs/relax?rev=21405&view=rev
Log:
Added the TAP03 model to the dispersion chapter of the user manual.
Modified:
branches/relax_disp/docs/latex/bibliography.bib
branches/relax_disp/docs/latex/dispersion.tex
branches/relax_disp/docs/latex/dispersion_models.tex
branches/relax_disp/docs/latex/dispersion_software.tex
Modified: branches/relax_disp/docs/latex/bibliography.bib
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/docs/latex/bibliography.bib?rev=21405&r1=21404&r2=21405&view=diff
==============================================================================
--- branches/relax_disp/docs/latex/bibliography.bib (original)
+++ branches/relax_disp/docs/latex/bibliography.bib Fri Nov 8 11:09:31 2013
@@ -72,6 +72,9 @@
% Mathematics of Computation.
@STRING{mc = "Math. Comp."}
+
+% Molecular Physics.
+@STRING{mp = "Mol. Phys."}
% Physical Review.
@STRING{physrev = "Phys. Rev."}
@@ -6887,6 +6890,51 @@
year = 2001
}
+@Article{Trott03,
+ Author = {Trott, O and Abergel, D and Palmer, AG},
+ Title = {An average-magnetization analysis of {R}-1 rho
+ relaxation outside of the fast exchange},
+ Journal = mp,
+ Volume = {101},
+ Number = {6},
+ Pages = {753-763},
+ abstract = {Approximate expressions for the {NMR} spin relaxation
+ rate constant in the rotating frame of reference {R}-1rho
+ are derived for two-site chemical exchange by
+ consideration of the evolution of the average density
+ operator using the stochastic {L}iouville equation.
+ {R}-1rho is obtained as a linearized approximation to the
+ largest (least negative) eigenvalue of the matrix
+ describing the evolution of the average density
+ operator in the long-term limit. The expressions
+ obtained are more accurate than existing expressions
+ when exchange is not fast and the populations of the
+ exchanging sites are close to equal. The new
+ expressions for {R}-1rho facilitate the interpretation of
+ chemical exchange phenomena in proteins and other
+ biological macromolecules.},
+ address = {4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON,
+ ENGLAND},
+ affiliation = {Abergel, D (Reprint Author), Ecole Normale Super,
+ Chim Lab, F-75005 Paris, France. Ecole Normale Super,
+ Chim Lab, F-75005 Paris, France. Columbia Univ, Dept
+ Biochem \& Mol Biophys, New York, NY 10032 USA.},
+ doc-delivery-number = {660MA},
+ doi = {10.1080/0026897021000054826},
+ issn = {0026-8976},
+ journal-iso = {Mol. Phys.},
+ keywords-plus = {SPIN},
+ language = {English},
+ number-of-cited-references = {19},
+ publisher = {TAYLOR \& FRANCIS LTD},
+ research-areas = {Physics},
+ times-cited = {18},
+ type = {Article},
+ unique-id = {ISI:000181835900005},
+ web-of-science-categories = {Physics, Atomic, Molecular \& Chemical},
+ year = 2003
+}
+
@Article{TrottPalmer02,
Author = {Trott, O. and Palmer, 3rd, A. G.},
Title = {R1rho relaxation outside of the fast-exchange limit.},
Modified: branches/relax_disp/docs/latex/dispersion.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/docs/latex/dispersion.tex?rev=21405&r1=21404&r2=21405&view=diff
==============================================================================
--- branches/relax_disp/docs/latex/dispersion.tex (original)
+++ branches/relax_disp/docs/latex/dispersion.tex Fri Nov 8 11:09:31 2013
@@ -837,6 +837,7 @@
Some of the missing models include:
\begin{description}
+\item[`TAP03':]\index{relaxation dispersion!TAP03 model} The
$\Ronerho$-type data \citet{Trott03} 2-site analytic equation for all time
scales with parameters $\{\Ronerhoprime, \dots, \pA, \dw, \kex\}$.
\item[`TP04':]\index{relaxation dispersion!TP04 model} The $\Ronerho$-type
data \citet{TrottPalmer04} N-site analytic equation for all time scales with
parameters $\{\Ronerhoprime, \dots, \pone, \dots, \pN, \aveomega, \konetwo,
\dots\, \koneN\}$.
\item[`MP05':]\index{relaxation dispersion!TP04 model} The $\Ronerho$-type
data \citet{MiloushevPalmer05} 2-site analytic equation for all time scales
with parameters $\{\Ronerhoprime, \dots, \pA, \dw, \kex\}$.
\item[`MMQ 3-site linear':]\index{relaxation dispersion!MMQ 3-site linear
model} The model of the numeric solution for linear 3-site exchange for
combined proton-heteronuclear SQ, ZQ, DQ and MQ (MMQ) CPMG-type data.
Modified: branches/relax_disp/docs/latex/dispersion_models.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/docs/latex/dispersion_models.tex?rev=21405&r1=21404&r2=21405&view=diff
==============================================================================
--- branches/relax_disp/docs/latex/dispersion_models.tex (original)
+++ branches/relax_disp/docs/latex/dispersion_models.tex Fri Nov 8 11:09:31
2013
@@ -77,6 +77,7 @@
DPL94 & Analytic & 2 & $\{\Ronerhoprime, \dots,
\Phiex, \kex\}$ & Fast exchange &
\citet{Davis94} \\
M61 skew & Analytic & 2 & $\{\Ronerhoprime, \dots, \pA,
\dw, \kex\}$ & $\pA \gg \pB$, on-resonance & \citet{Meiboom61}
\\
TP02 & Analytic & 2 & $\{\Ronerhoprime, \dots, \pA,
\dw, \kex\}$ & Not fast exchange &
\citet{TrottPalmer02} \\
+TAP03\footnotemark[1] & Analytic & 2 & $\{\Ronerhoprime, \dots, \pA,
\dw, \kex\}$ & $\pA > \pB$ & \citet{Trott03} \\
TP04\footnotemark[1] & Analytic & N & $\{\Ronerhoprime, \dots,
\pone, \dots, \pN, \aveomega, \konetwo, \dots\, \koneN\}$ & One site
dominant & \citet{TrottPalmer04} \\
MP05\footnotemark[1] & Analytic & 2 & $\{\Ronerhoprime, \dots, \pA,
\dw, \kex\}$ & $\pA > \pB$ &
\citet{MiloushevPalmer05} \\
NS R1rho 2-site & Numeric & 2 & $\{\Ronerhoprime, \dots, \pA,
\dw, \kex\}$ & $\pA > \pB$ & - \\
Modified: branches/relax_disp/docs/latex/dispersion_software.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/relax_disp/docs/latex/dispersion_software.tex?rev=21405&r1=21404&r2=21405&view=diff
==============================================================================
--- branches/relax_disp/docs/latex/dispersion_software.tex (original)
+++ branches/relax_disp/docs/latex/dispersion_software.tex Fri Nov 8
11:09:31 2013
@@ -66,6 +66,7 @@
M61 & \no & \no & \no & \no & \no & \no & \no
& \no & \yes \\
DPL94 & \no & \no & \no & \no & \no & \no & \no
& \no & \yes \\
TP02 & \no & \yes & \no & \no & \no & \no & \no
& \no & \yes \\
+TAP03 & \no & \no & \no & \no & \no & \no & \no
& \no & \no \\
TP04 & \no & \no & \no & \no & \no & \no & \no
& \no & \no \\
MP05 & \no & \no & \no & \no & \no & \no & \no
& \no & \no \\
NS 2-site & \no & \yes & \no & \no & \no & \no & ?
& \no & \yes \\
r21405 - in /branches/relax_disp/docs/latex: bibliography.bib dispersion.tex dispersion_models.tex dispersion_software.tex