mailr21476 - /branches/relax_disp/specific_analyses/relax_disp/variables.py


Others Months | Index by Date | Thread Index
>>   [Date Prev] [Date Next] [Thread Prev] [Thread Next]

Header


Content

Posted by edward on November 17, 2013 - 13:09:
Author: bugman
Date: Sun Nov 17 13:09:24 2013
New Revision: 21476

URL: http://svn.gna.org/viewcvs/relax?rev=21476&view=rev
Log:
Added the 'TAP03' model to the dispersion variables.

This is the Trott, Abergel and Palmer 2003 R1rho analytic model for 2-site 
off-resonance exchange.

This follows the tutorial for adding relaxation dispersion models at:
http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax#Adding_the_model_to_the_list


Modified:
    branches/relax_disp/specific_analyses/relax_disp/variables.py

Modified: branches/relax_disp/specific_analyses/relax_disp/variables.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/relax_disp/specific_analyses/relax_disp/variables.py?rev=21476&r1=21475&r2=21476&view=diff
==============================================================================
--- branches/relax_disp/specific_analyses/relax_disp/variables.py (original)
+++ branches/relax_disp/specific_analyses/relax_disp/variables.py Sun Nov 17 
13:09:24 2013
@@ -88,6 +88,9 @@
 MODEL_TP02 = 'TP02'
 """The R1rho 2-site exchange model of Trott and Palmer (2002)."""
 
+MODEL_TAP03 = 'TAP03'
+"""The R1rho 2-site exchange model of Trott, Abergel and Palmer (2003)."""
+
 MODEL_MP05 = 'MP05'
 """The R1rho 2-site off-resonance exchange model of Miloushev and Palmer 
(2005)."""
 
@@ -120,10 +123,10 @@
 
 
 # The model lists.
-MODEL_LIST_DISP = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, 
MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_M61, MODEL_M61B, 
MODEL_DPL94, MODEL_TP02, MODEL_MP05, MODEL_NS_CPMG_2SITE_3D, 
MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, 
MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, 
MODEL_NS_R1RHO_2SITE, MODEL_MQ_CR72, MODEL_MMQ_2SITE]
+MODEL_LIST_DISP = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, 
MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_M61, MODEL_M61B, 
MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_CPMG_2SITE_3D, 
MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, 
MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, 
MODEL_NS_R1RHO_2SITE, MODEL_MQ_CR72, MODEL_MMQ_2SITE]
 """The list of all dispersion models (excluding the R2eff model)."""
 
-MODEL_LIST_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, 
MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_M61, 
MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_MP05, MODEL_NS_CPMG_2SITE_3D, 
MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, 
MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, 
MODEL_NS_R1RHO_2SITE, MODEL_MQ_CR72, MODEL_MMQ_2SITE]
+MODEL_LIST_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, 
MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_M61, 
MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, 
MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, 
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, 
MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_MQ_CR72, 
MODEL_MMQ_2SITE]
 """The list of the R2eff model together with all dispersion models."""
 
 MODEL_LIST_CPMG = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, 
MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_NS_CPMG_2SITE_3D, 
MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, 
MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED]
@@ -132,10 +135,10 @@
 MODEL_LIST_CPMG_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, 
MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, 
MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, 
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, 
MODEL_NS_CPMG_2SITE_EXPANDED]
 """The list of the R2eff model together with all dispersion models 
specifically for CPMG-type experiments."""
 
-MODEL_LIST_R1RHO = [MODEL_NOREX, MODEL_M61, MODEL_M61B, MODEL_DPL94, 
MODEL_TP02, MODEL_MP05, MODEL_NS_R1RHO_2SITE]
+MODEL_LIST_R1RHO = [MODEL_NOREX, MODEL_M61, MODEL_M61B, MODEL_DPL94, 
MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_R1RHO_2SITE]
 """The list of all dispersion models specifically for R1rho-type experiments 
(excluding the R2eff model)."""
 
-MODEL_LIST_R1RHO_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_M61, MODEL_M61B, 
MODEL_DPL94, MODEL_TP02, MODEL_MP05, MODEL_NS_R1RHO_2SITE]
+MODEL_LIST_R1RHO_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_M61, MODEL_M61B, 
MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_R1RHO_2SITE]
 """The list of the R2eff model together with all dispersion models 
specifically for R1rho-type experiments."""
 
 MODEL_LIST_MQ_CPMG = [MODEL_NOREX, MODEL_MQ_CR72, MODEL_MMQ_2SITE]
@@ -144,7 +147,7 @@
 MODEL_LIST_MQ_CPMG_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_MQ_CR72, 
MODEL_MMQ_2SITE]
 """The list of the R2eff model together with all dispersion models 
specifically for MQ CPMG-type experiments."""
 
-MODEL_LIST_ANALYTIC = [MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, 
MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01,MODEL_M61, MODEL_M61B, 
MODEL_DPL94, MODEL_TP02, MODEL_MP05, MODEL_MQ_CR72]
+MODEL_LIST_ANALYTIC = [MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, 
MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01,MODEL_M61, MODEL_M61B, 
MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_MQ_CR72]
 """The list of all analytic models."""
 
 MODEL_LIST_NUMERIC = [MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, 
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, 
MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_MMQ_2SITE]




Related Messages


Powered by MHonArc, Updated Sun Nov 17 13:20:02 2013