Author: bugman Date: Sun Nov 17 13:09:24 2013 New Revision: 21476 URL: http://svn.gna.org/viewcvs/relax?rev=21476&view=rev Log: Added the 'TAP03' model to the dispersion variables. This is the Trott, Abergel and Palmer 2003 R1rho analytic model for 2-site off-resonance exchange. This follows the tutorial for adding relaxation dispersion models at: http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax#Adding_the_model_to_the_list Modified: branches/relax_disp/specific_analyses/relax_disp/variables.py Modified: branches/relax_disp/specific_analyses/relax_disp/variables.py URL: http://svn.gna.org/viewcvs/relax/branches/relax_disp/specific_analyses/relax_disp/variables.py?rev=21476&r1=21475&r2=21476&view=diff ============================================================================== --- branches/relax_disp/specific_analyses/relax_disp/variables.py (original) +++ branches/relax_disp/specific_analyses/relax_disp/variables.py Sun Nov 17 13:09:24 2013 @@ -88,6 +88,9 @@ MODEL_TP02 = 'TP02' """The R1rho 2-site exchange model of Trott and Palmer (2002).""" +MODEL_TAP03 = 'TAP03' +"""The R1rho 2-site exchange model of Trott, Abergel and Palmer (2003).""" + MODEL_MP05 = 'MP05' """The R1rho 2-site off-resonance exchange model of Miloushev and Palmer (2005).""" @@ -120,10 +123,10 @@ # The model lists. -MODEL_LIST_DISP = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_MP05, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_MQ_CR72, MODEL_MMQ_2SITE] +MODEL_LIST_DISP = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_MQ_CR72, MODEL_MMQ_2SITE] """The list of all dispersion models (excluding the R2eff model).""" -MODEL_LIST_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_MP05, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_MQ_CR72, MODEL_MMQ_2SITE] +MODEL_LIST_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_MQ_CR72, MODEL_MMQ_2SITE] """The list of the R2eff model together with all dispersion models.""" MODEL_LIST_CPMG = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED] @@ -132,10 +135,10 @@ MODEL_LIST_CPMG_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED] """The list of the R2eff model together with all dispersion models specifically for CPMG-type experiments.""" -MODEL_LIST_R1RHO = [MODEL_NOREX, MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_MP05, MODEL_NS_R1RHO_2SITE] +MODEL_LIST_R1RHO = [MODEL_NOREX, MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_R1RHO_2SITE] """The list of all dispersion models specifically for R1rho-type experiments (excluding the R2eff model).""" -MODEL_LIST_R1RHO_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_MP05, MODEL_NS_R1RHO_2SITE] +MODEL_LIST_R1RHO_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_R1RHO_2SITE] """The list of the R2eff model together with all dispersion models specifically for R1rho-type experiments.""" MODEL_LIST_MQ_CPMG = [MODEL_NOREX, MODEL_MQ_CR72, MODEL_MMQ_2SITE] @@ -144,7 +147,7 @@ MODEL_LIST_MQ_CPMG_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_MQ_CR72, MODEL_MMQ_2SITE] """The list of the R2eff model together with all dispersion models specifically for MQ CPMG-type experiments.""" -MODEL_LIST_ANALYTIC = [MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01,MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_MP05, MODEL_MQ_CR72] +MODEL_LIST_ANALYTIC = [MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01,MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_MQ_CR72] """The list of all analytic models.""" MODEL_LIST_NUMERIC = [MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_MMQ_2SITE]