r21824 - /trunk/test_suite/system_tests/peak_lists.py -- December 06, 2013 - 12:09

Author: tlinnet
Date: Fri Dec  6 12:09:54 2013
New Revision: 21824

URL: http://svn.gna.org/viewcvs/relax?rev=21824&view=rev
Log:
Implemented system test for reading spins from a NMRPipe SeriesTab formatted 
file, where the assignments for second dimension is missing.

This will be a typically export from SPARKY, converted to NMRPipe format, and 
proÂcessed with SeriesTab.

Work in progress for Support Request #3044, 
(https://gna.org/support/index.php?3044) - Load spins from SPARKY list.

Modified:
    trunk/test_suite/system_tests/peak_lists.py

Modified: trunk/test_suite/system_tests/peak_lists.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/peak_lists.py?rev=21824&r1=21823&r2=21824&view=diff
==============================================================================
--- trunk/test_suite/system_tests/peak_lists.py (original)
+++ trunk/test_suite/system_tests/peak_lists.py Fri Dec  6 12:09:54 2013
@@ -253,6 +253,33 @@
         self.assertEqual(len(cdp.mol[0].res[3].spin), 1)
         self.assertEqual(cdp.mol[0].res[3].spin[0].num, None)
         self.assertEqual(cdp.mol[0].res[3].spin[0].name, 'N')
+
+
+    def test_read_spins_peak_list_NMRPipe_seriesTab_multi_no_2dim(self):
+        """Test the reading of an NMRPipe seriesTab peak list, with no 
assignment for second dimension."""
+
+        # Read the peak list.
+        
self.interpreter.spectrum.read_spins(file="folded_sparky_corr_final_max_standard_trunc.ser",
 dir=status.install_path + 
sep+'test_suite'+sep+'shared_data'+sep+'dispersion'+sep+'KTeilum_FMPoulsen_MAkke_2006'+sep+'acbp_cpmg_disp_101MGuHCl_40C_041223',
 dim=1)
+        
self.interpreter.spectrum.read_spins(file="folded_sparky_corr_final_max_standard_trunc.ser",
 dir=status.install_path + 
sep+'test_suite'+sep+'shared_data'+sep+'dispersion'+sep+'KTeilum_FMPoulsen_MAkke_2006'+sep+'acbp_cpmg_disp_101MGuHCl_40C_041223',
 dim=2)
+
+        # Test some of the sequence.
+        self.assertEqual(len(cdp.mol), 1)
+        self.assertEqual(cdp.mol[0].name, None)
+        self.assertEqual(len(cdp.mol[0].res), 2)
+
+        # 1st residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 61)
+        self.assertEqual(cdp.mol[0].res[0].name, 'L')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, None)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 2nd residue, which is a None residue.
+        self.assertEqual(cdp.mol[0].res[1].num, None)
+        self.assertEqual(cdp.mol[0].res[1].name, None)
+        self.assertEqual(len(cdp.mol[0].res[1].spin), 1)
+        self.assertEqual(cdp.mol[0].res[1].spin[0].num, None)
+        self.assertEqual(cdp.mol[0].res[1].spin[0].name, 'HN')
 
 
     def test_read_spins_peak_list_sparky(self):