r21843 - /trunk/test_suite/system_tests/peak_lists.py -- December 06, 2013 - 18:11

Author: tlinnet
Date: Fri Dec  6 18:11:29 2013
New Revision: 21843

URL: http://svn.gna.org/viewcvs/relax?rev=21843&view=rev
Log:
Added system for using generic file for reading spins.

Work in progress for Support Request #3044, 
(https://gna.org/support/index.php?3044) - Load spins from SPARKY list.

Modified:
    trunk/test_suite/system_tests/peak_lists.py

Modified: trunk/test_suite/system_tests/peak_lists.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/peak_lists.py?rev=21843&r1=21842&r2=21843&view=diff
==============================================================================
--- trunk/test_suite/system_tests/peak_lists.py (original)
+++ trunk/test_suite/system_tests/peak_lists.py Fri Dec  6 18:11:29 2013
@@ -139,6 +139,53 @@
             # Check the values.
             for i in range(len(times)):
                 self.assertEqual(spin.intensities[names[i]], 
heights[index][i])
+
+
+    def test_read_spins_peak_list_generic(self):
+        """Test the reading of spins from a generic peak intensity list."""
+
+               # Read the peak spins.
+        self.interpreter.spectrum.read_spins(file="generic_intensity.txt", 
dir=status.install_path + 
sep+'test_suite'+sep+'shared_data'+sep+'peak_lists', res_num_col=1, 
res_name_col=2)
+
+        # Test some of the sequence.
+        self.assertEqual(len(cdp.mol), 1)
+        self.assertEqual(cdp.mol[0].name, None)
+        self.assertEqual(len(cdp.mol[0].res), 5)
+
+        # 1st residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 20)
+        self.assertEqual(cdp.mol[0].res[0].name, 'GLY')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, None)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, None)
+
+        # 2nd residue.
+        self.assertEqual(cdp.mol[0].res[1].num, 23)
+        self.assertEqual(cdp.mol[0].res[1].name, 'ALA')
+        self.assertEqual(len(cdp.mol[0].res[1].spin), 1)
+        self.assertEqual(cdp.mol[0].res[1].spin[0].num, None)
+        self.assertEqual(cdp.mol[0].res[1].spin[0].name, None)
+
+        # 3rd residue.
+        self.assertEqual(cdp.mol[0].res[2].num, 34)
+        self.assertEqual(cdp.mol[0].res[2].name, 'CYS')
+        self.assertEqual(len(cdp.mol[0].res[2].spin), 1)
+        self.assertEqual(cdp.mol[0].res[2].spin[0].num, None)
+        self.assertEqual(cdp.mol[0].res[2].spin[0].name, None)
+
+        # 4th residue.
+        self.assertEqual(cdp.mol[0].res[3].num, 35)
+        self.assertEqual(cdp.mol[0].res[3].name, 'MET')
+        self.assertEqual(len(cdp.mol[0].res[3].spin), 1)
+        self.assertEqual(cdp.mol[0].res[3].spin[0].num, None)
+        self.assertEqual(cdp.mol[0].res[3].spin[0].name, None)
+
+        # 5th residue.
+        self.assertEqual(cdp.mol[0].res[4].num, 36)
+        self.assertEqual(cdp.mol[0].res[4].name, 'LYS')
+        self.assertEqual(len(cdp.mol[0].res[4].spin), 1)
+        self.assertEqual(cdp.mol[0].res[4].spin[0].num, None)
+        self.assertEqual(cdp.mol[0].res[4].spin[0].name, None)
 
 
     def test_read_spins_peak_list_nmrview(self):