r21845 - /trunk/test_suite/system_tests/peak_lists.py -- December 06, 2013 - 18:11

Author: tlinnet
Date: Fri Dec  6 18:11:32 2013
New Revision: 21845

URL: http://svn.gna.org/viewcvs/relax?rev=21845&view=rev
Log:
Added another systemtest for returning spins from a generic file.

Work in progress for Support Request #3044, 
(https://gna.org/support/index.php?3044) - Load spins from SPARKY list.

Modified:
    trunk/test_suite/system_tests/peak_lists.py

Modified: trunk/test_suite/system_tests/peak_lists.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/peak_lists.py?rev=21845&r1=21844&r2=21845&view=diff
==============================================================================
--- trunk/test_suite/system_tests/peak_lists.py (original)
+++ trunk/test_suite/system_tests/peak_lists.py Fri Dec  6 18:11:32 2013
@@ -186,6 +186,32 @@
         self.assertEqual(len(cdp.mol[0].res[4].spin), 1)
         self.assertEqual(cdp.mol[0].res[4].spin[0].num, None)
         self.assertEqual(cdp.mol[0].res[4].spin[0].name, None)
+
+
+    def test_read_spins_peak_list_generic_with_spin_name(self):
+        """Test the reading of spins with spin name in columns from a 
generic peak intensity list."""
+
+        # Read the peak spins.
+        self.interpreter.spectrum.read_spins(file='test.seq', 
dir=status.install_path + 
sep+'test_suite'+sep+'shared_data'+sep+'peak_lists', mol_name_col=1, 
res_num_col=2, res_name_col=3, spin_num_col=4, spin_name_col=5)
+
+        # Test some of the sequence.
+        self.assertEqual(len(cdp.mol), 1)
+        self.assertEqual(cdp.mol[0].name, 'protein')
+        self.assertEqual(len(cdp.mol[0].res), 10)
+
+        # 1st residue.
+        self.assertEqual(cdp.mol[0].res[0].num, 10)
+        self.assertEqual(cdp.mol[0].res[0].name, 'L')
+        self.assertEqual(len(cdp.mol[0].res[0].spin), 1)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].num, 10)
+        self.assertEqual(cdp.mol[0].res[0].spin[0].name, 'N')
+
+        # 2nd residue.
+        self.assertEqual(cdp.mol[0].res[1].num, 6)
+        self.assertEqual(cdp.mol[0].res[1].name, 'V')
+        self.assertEqual(len(cdp.mol[0].res[1].spin), 1)
+        self.assertEqual(cdp.mol[0].res[1].spin[0].num, 6)
+        self.assertEqual(cdp.mol[0].res[1].spin[0].name, 'N')
 
 
     def test_read_spins_peak_list_nmrview(self):