Author: bugman
Date: Wed Feb 19 14:09:31 2014
New Revision: 22208
URL: http://svn.gna.org/viewcvs/relax?rev=22208&view=rev
Log:
Added the infrastructure for the unit tests of the
specific_analyses.relax_disp.disp_data module.
This is in response to the post
http://thread.gmane.org/gmane.science.nmr.relax.scm/19963/focus=5046
by Troels, and is described in my response at
http://thread.gmane.org/gmane.science.nmr.relax.scm/19963/focus=5048.
Added:
trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_disp_data.py
- copied, changed from r22205,
trunk/test_suite/unit_tests/_specific_analyses/_model_free/test_main.py
Copied:
trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_disp_data.py
(from r22205,
trunk/test_suite/unit_tests/_specific_analyses/_model_free/test_main.py)
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_disp_data.py?p2=trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_disp_data.py&p1=trunk/test_suite/unit_tests/_specific_analyses/_model_free/test_main.py&r1=22205&r2=22208&rev=22208&view=diff
==============================================================================
--- trunk/test_suite/unit_tests/_specific_analyses/_model_free/test_main.py
(original)
+++
trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_disp_data.py
Wed Feb 19 14:09:31 2014
@@ -1,6 +1,6 @@
###############################################################################
#
#
-# Copyright (C) 2008-2013 Edward d'Auvergne
#
+# Copyright (C) 2008-2014 Edward d'Auvergne
#
#
#
# This file is part of the program relax (http://www.nmr-relax.com).
#
#
#
@@ -24,97 +24,17 @@
# relax module imports.
from data_store import Relax_data_store; ds = Relax_data_store()
-from pipe_control import pipes, results, structure
-from lib.errors import RelaxError
-from specific_analyses.model_free import main
+from pipe_control import state
+from specific_analyses.relax_disp.disp_data import
loop_exp_frq_offset_point_time
from status import Status; status = Status()
from test_suite.unit_tests.base_classes import UnitTestCase
-class Test_main(UnitTestCase):
- """Unit tests for the class methods of
specific_analyses.model_free.main.Model_free_main."""
-
- # Instantiate the class.
- inst = main.Model_free_main()
-
+class Test_disp_data(UnitTestCase):
+ """Unit tests for the functions of the
specific_analyses.relax_disp.disp_data module."""
def setUp(self):
"""Setup some structures for the unit tests."""
- # Create a model-free data pipe.
- ds.add(pipe_name='orig', pipe_type='mf')
-
-
- def test_duplicate_data1(self):
- """Test the model-free duplicate_data() method."""
-
- # Duplicate the data.
- self.inst.duplicate_data('orig', 'new', model_info=0)
-
-
- def test_duplicate_data2(self):
- """Test the model-free duplicate_data() method."""
-
- # Read a model-free results file.
- results.read(file='final_results_trunc_1.3_v2',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP')
-
- # Duplicate the data.
- self.inst.duplicate_data('orig', 'new', model_info=0)
-
-
- def test_duplicate_data3(self):
- """Test the model-free duplicate_data() method."""
-
- # Read a model-free results file.
- results.read(file='final_results_trunc_1.3_v2',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP')
-
- # Load a structure.
- structure.main.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1)
-
- # Duplicate the data.
- self.inst.duplicate_data('orig', 'new', model_info=0)
-
- # Check the original data.
- self.assert_(hasattr(pipes.get_pipe('orig'), 'structure'))
-
- # Check the duplication.
- self.assert_(hasattr(pipes.get_pipe('new'), 'structure'))
-
-
- def test_duplicate_data_single_mf_model(self):
- """Test the model-free duplicate_data() method."""
-
- # Read a model-free results file.
- results.read(file='final_results_trunc_1.3_v2',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP')
-
- # Load a structure.
- structure.main.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1)
-
- # Duplicate the data, model by model.
- self.inst.duplicate_data('orig', 'new', model_info=0)
- self.inst.duplicate_data('orig', 'new', model_info=1)
- self.inst.duplicate_data('orig', 'new', model_info=2)
- self.inst.duplicate_data('orig', 'new', model_info=3)
-
-
- def test_duplicate_data_fail1(self):
- """Test the failure of the model-free duplicate_data() method when
the structures are not consistent."""
-
- # Read a model-free results file.
- results.read(file='final_results_trunc_1.3_v1',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP')
-
- # Load a structure.
- structure.main.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1)
-
- # Create a new model-free data pipe.
- ds.add(pipe_name='new', pipe_type='mf')
-
- # Load the structure for the second pipe.
- structure.main.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1)
-
- # Modify the structure.
- dp = pipes.get_pipe('new')
- dp.structure.structural_data[0].mol[0].file_name = 'test'
-
- # Duplicate the data and catch the error.
- self.assertRaises(RelaxError, self.inst.duplicate_data, 'orig',
'new', model_info=0)
+ # Create a dispersion data pipe.
+ ds.add(pipe_name='orig', pipe_type='relax_disp')
r22208 - /trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_disp_data.py