Author: bugman
Date: Wed Feb 19 18:01:13 2014
New Revision: 22218
URL: http://svn.gna.org/viewcvs/relax?rev=22218&view=rev
Log:
Merged revisions 22196-22217 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/trunk
........
r22196 | bugman | 2014-02-17 17:59:18 +0100 (Mon, 17 Feb 2014) | 3 lines
Updated the copyright statement shown in the GUI for 2014.
........
r22197 | tlinnet | 2014-02-18 12:05:54 +0100 (Tue, 18 Feb 2014) | 3 lines
Save state added for bug #21665.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG
analysis with two fields at two delay times.
........
r22198 | tlinnet | 2014-02-18 12:19:41 +0100 (Tue, 18 Feb 2014) | 3 lines
Added systemtest to catch bug: relax -s
Relax_disp.test_bug_21665_cpmg_two_fields_two_delaytimes_fail
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG
analysis with two fields at two delay times.
........
r22199 | tlinnet | 2014-02-18 15:26:45 +0100 (Tue, 18 Feb 2014) | 3 lines
Added a systemtest for using both calc() and a systemtest for relax_disp
auto analysis.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG
analysis with two fields at two delay times.
........
r22200 | bugman | 2014-02-18 18:55:33 +0100 (Tue, 18 Feb 2014) | 6 lines
Added some initial screenshots of the dispersion GUI analysis.
These will be used to create a tutorial for using the relaxation dispersion
analysis in the GUI to
be added to the dispersion chapter of the relax manual.
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r22201 | bugman | 2014-02-18 19:07:44 +0100 (Tue, 18 Feb 2014) | 6 lines
Started to create the tutorial in the manual for using the dispersion GUI.
This is at the end of the relaxation dispersion chapter of the manual and
covers the basic setup of
spin systems. It includes the recently added screenshots.
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r22202 | bugman | 2014-02-19 10:15:16 +0100 (Wed, 19 Feb 2014) | 6 lines
Improvement to the formatting of the GUI menu item text in the manual.
The text can now have a line break between the items, just after the
arrows. This significantly
improves the paragraph layout in the manual.
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r22203 | bugman | 2014-02-19 10:37:18 +0100 (Wed, 19 Feb 2014) | 7 lines
Created two new LaTeX commands for improving the layout of the relax manual.
These are \ossep and \osus which will be used to format the file and
directory separator character
and the underscore character respectively. They will be used in the
\file{} and \directory{}
commands to add the '/\linebreak[0]' and '\_\linebreak[0]' text to allow
for better line breaking.
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r22204 | bugman | 2014-02-19 11:13:22 +0100 (Wed, 19 Feb 2014) | 6 lines
Converted all LaTeX files of the manual to use the new \ossep and \osus
commands.
This will result in better formatting of the manual by making the
linebreaking after '/' and '_'
characters consistent and universal.
........
r22205 | bugman | 2014-02-19 11:53:42 +0100 (Wed, 19 Feb 2014) | 7 lines
Created two new LaTeX commands for improving the layout of user functions
in the relax manual.
These are \ufsep and \ufus which will be used to format the user function
separator character and
the underscore character respectively. They are used in the \uf{} commands
to add the
'.\linebreak[0]' and '\_\linebreak[0]' text to allow for improved and
consistent line breaking.
........
r22206 | bugman | 2014-02-19 13:59:52 +0100 (Wed, 19 Feb 2014) | 5 lines
Added the unit test infrastructure for testing the
specific_analyses.relax_disp package.
This currently includes the package __all__ list unit test.
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r22207 | bugman | 2014-02-19 14:02:56 +0100 (Wed, 19 Feb 2014) | 5 lines
Updated the specific_analyses.relax_disp package __all__ list.
This was identified in the previously committed unit test.
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r22208 | bugman | 2014-02-19 14:09:31 +0100 (Wed, 19 Feb 2014) | 7 lines
Added the infrastructure for the unit tests of the
specific_analyses.relax_disp.disp_data module.
This is in response to the post
http://thread.gmane.org/gmane.science.nmr.relax.scm/19963/focus=5046
by Troels, and is described in my response at
http://thread.gmane.org/gmane.science.nmr.relax.scm/19963/focus=5048.
........
r22209 | bugman | 2014-02-19 14:27:48 +0100 (Wed, 19 Feb 2014) | 8 lines
Created two new LaTeX commands for improving the layout of Python code in
the relax manual.
These are \pysep and \pyus which will be used to format the Python module
separator character and
the Python underscore character respectively. They are used in the
\module{}, \pycode{}, etc.
commands to add the '.\linebreak[0]' and '\_\linebreak[0]' text to allow
for improved and consistent
line breaking.
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r22210 | bugman | 2014-02-19 15:37:07 +0100 (Wed, 19 Feb 2014) | 10 lines
Complete reformatting of the base LaTeX files.
The paragraph structure has been changed so that each sentence now starts
on a new line. This is
for better tracking of changes (via 'svn diff' for example), for better
searchability of certain
text elements using command line tools such as 'grep', and for easier
easier use of the 'sed' tool.
The change tracking is most important as it allows for finer granularity -
a small change will now
only be shown as a change in one sentence rather than the whole paragraph,
allowing the change to be
identified more easily. It also allows for easier commit maintenance.
........
r22211 | bugman | 2014-02-19 16:43:05 +0100 (Wed, 19 Feb 2014) | 7 lines
Reformatting of all of the LaTeX code for the figures in the relax manual.
This is related to commit r22210. The aim is to have as many parts as
possible on separate lines to
allow for better control of changes in the subversion repository and for
improved usage of command
line tools.
........
r22212 | bugman | 2014-02-19 17:09:37 +0100 (Wed, 19 Feb 2014) | 6 lines
Reformatting of all of the LaTeX code for the itemize and description lists
in the relax manual.
This is to regularise the LaTeX code throughout the *.tex files of the
manual. All items are now
indented for easier viewing. And leading empty lines before the lists have
all been removed.
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r22213 | bugman | 2014-02-19 17:20:58 +0100 (Wed, 19 Feb 2014) | 3 lines
The docstring fetching script for the manual now formats lists as in commit
r22212.
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r22214 | tlinnet | 2014-02-19 17:23:35 +0100 (Wed, 19 Feb 2014) | 3 lines
Implemented unit test for catching the correct return of
loop_exp_frq_offset_point_time.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG
analysis with two fields at two delay times.
........
r22215 | bugman | 2014-02-19 17:25:39 +0100 (Wed, 19 Feb 2014) | 3 lines
Grammar corrections - changed the 'eg.' abbreviation to 'e.g.' in a couple
of places.
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r22216 | tlinnet | 2014-02-19 17:43:43 +0100 (Wed, 19 Feb 2014) | 3 lines
Modified the unit test name for testing the correct return of the
relaxation time periods.
Regarding bug #21665, (https://gna.org/bugs/?21665) - Running a CPMG
analysis with two fields at two delay times.
........
r22217 | bugman | 2014-02-19 17:58:23 +0100 (Wed, 19 Feb 2014) | 6 lines
Added more to the dispersion GUI analysis tutorial.
This includes a screenshot showing the use of the 'Spin isotope' button in
the GUI. Descriptions
for all five 'metadata' buttons have been added as well.
........
Added:
branches/double_rotor/graphics/screenshots/dispersion_analysis/
- copied from r22217, trunk/graphics/screenshots/dispersion_analysis/
branches/double_rotor/test_suite/shared_data/dispersion/bug_21665.bz2
- copied unchanged from r22217,
trunk/test_suite/shared_data/dispersion/bug_21665.bz2
branches/double_rotor/test_suite/unit_tests/_specific_analyses/_relax_disp/
- copied from r22217,
trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/
Modified:
branches/double_rotor/ (props changed)
branches/double_rotor/docs/latex/citations.tex
branches/double_rotor/docs/latex/consistency_tests.tex
branches/double_rotor/docs/latex/curvefit.tex
branches/double_rotor/docs/latex/data_model.tex
branches/double_rotor/docs/latex/develop.tex
branches/double_rotor/docs/latex/dispersion.tex
branches/double_rotor/docs/latex/fetch_docstrings.py
branches/double_rotor/docs/latex/functions.tex
branches/double_rotor/docs/latex/infrastruct.tex
branches/double_rotor/docs/latex/install.tex
branches/double_rotor/docs/latex/intro.tex
branches/double_rotor/docs/latex/jw_mapping.tex
branches/double_rotor/docs/latex/licence.tex
branches/double_rotor/docs/latex/maths.tex
branches/double_rotor/docs/latex/model-free.tex
branches/double_rotor/docs/latex/noe.tex
branches/double_rotor/docs/latex/optimisation.tex
branches/double_rotor/docs/latex/relax.tex
branches/double_rotor/gui/relax_gui.py
branches/double_rotor/specific_analyses/relax_disp/__init__.py
branches/double_rotor/test_suite/system_tests/relax_disp.py
branches/double_rotor/user_functions/bmrb.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/double_rotor/docs/latex/citations.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/citations.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/consistency_tests.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/consistency_tests.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/curvefit.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/curvefit.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/data_model.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/data_model.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/develop.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/develop.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/dispersion.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/dispersion.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/fetch_docstrings.py
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/fetch_docstrings.py?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/functions.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/functions.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/infrastruct.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/infrastruct.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/install.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/install.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/intro.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/intro.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/jw_mapping.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/jw_mapping.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/licence.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/licence.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/maths.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/maths.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/model-free.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/model-free.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/noe.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/noe.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/optimisation.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/optimisation.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/docs/latex/relax.tex
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/docs/latex/relax.tex?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/gui/relax_gui.py
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/gui/relax_gui.py?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/specific_analyses/relax_disp/__init__.py
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/specific_analyses/relax_disp/__init__.py?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/test_suite/system_tests/relax_disp.py
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/test_suite/system_tests/relax_disp.py?rev=22218&r1=22217&r2=22218&view=diff
Modified: branches/double_rotor/user_functions/bmrb.py
URL:
http://svn.gna.org/viewcvs/relax/branches/double_rotor/user_functions/bmrb.py?rev=22218&r1=22217&r2=22218&view=diff
r22218 - in /branches/double_rotor: ./ docs/latex/ graphics/screenshots/dispersion_analysis/ gui/ specific_analyses/relax_di...