Author: bugman
Date: Mon Feb 24 16:33:08 2014
New Revision: 22289
URL: http://svn.gna.org/viewcvs/relax?rev=22289&view=rev
Log:
Created the Relax_disp.test_bug_21715_clustered_indexerror system test.
This is to catch bug #21715 (https://gna.org/bugs/?21715), the failure of the
relaxation dispersion
auto-analysis when running a clustered analysis due to an IndexError during
minimisation.
Added:
trunk/test_suite/shared_data/dispersion/bug_21715_clustered_indexerror/
trunk/test_suite/shared_data/dispersion/bug_21715_clustered_indexerror/non_clustered/
trunk/test_suite/shared_data/dispersion/bug_21715_clustered_indexerror/non_clustered/No
Rex/
trunk/test_suite/shared_data/dispersion/bug_21715_clustered_indexerror/non_clustered/No
Rex/results.bz2 (with props)
trunk/test_suite/shared_data/dispersion/bug_21715_clustered_indexerror/state.bz2
(with props)
Modified:
trunk/test_suite/system_tests/relax_disp.py
Added:
trunk/test_suite/shared_data/dispersion/bug_21715_clustered_indexerror/non_clustered/No
Rex/results.bz2
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/bug_21715_clustered_indexerror/non_clustered/No%20Rex/results.bz2?rev=22289&view=auto
==============================================================================
Binary file - no diff available.
Propchange:
trunk/test_suite/shared_data/dispersion/bug_21715_clustered_indexerror/non_clustered/No
Rex/results.bz2
------------------------------------------------------------------------------
svn:mime-type = application/octet-stream
Added:
trunk/test_suite/shared_data/dispersion/bug_21715_clustered_indexerror/state.bz2
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/bug_21715_clustered_indexerror/state.bz2?rev=22289&view=auto
==============================================================================
Binary file - no diff available.
Propchange:
trunk/test_suite/shared_data/dispersion/bug_21715_clustered_indexerror/state.bz2
------------------------------------------------------------------------------
svn:mime-type = application/octet-stream
Modified: trunk/test_suite/system_tests/relax_disp.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/relax_disp.py?rev=22289&r1=22288&r2=22289&view=diff
==============================================================================
--- trunk/test_suite/system_tests/relax_disp.py (original)
+++ trunk/test_suite/system_tests/relax_disp.py Mon Feb 24 16:33:08 2014
@@ -295,6 +295,23 @@
relax_disp.Relax_disp.opt_func_tol = 1e-5
relax_disp.Relax_disp.opt_max_iterations = 1000
relax_disp.Relax_disp(pipe_name="compare_128_FT_R2eff",
pipe_bundle="cpmg_disp_sod1d90a", results_dir=self.tmpdir, models=['R2eff'],
grid_inc=3, mc_sim_num=5, modsel='AIC', pre_run_dir=None, insignificance=1.0,
numeric_only=False, mc_sim_all_models=False, eliminate=True)
+
+
+ def test_bug_21715_clustered_indexerror(self):
+ """Catch U{bug #21715<https://gna.org/bugs/?21715>}, the failure of
a clustered auto-analysis due to an IndexError."""
+
+ # Clear the data store.
+ self.interpreter.reset()
+
+ # Load the state.
+ state = status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'dispersion'+sep+'bug_21715_clustered_indexerror'+sep+'state.bz2'
+ self.interpreter.state.load(state, force=True)
+
+ # Execute the auto-analysis (fast).
+ pre_run_dir = status.install_path +
sep+'test_suite'+sep+'shared_data'+sep+'dispersion'+sep+'bug_21715_clustered_indexerror'+sep+'non_clustered'
+ relax_disp.Relax_disp.opt_func_tol = 1e-5
+ relax_disp.Relax_disp.opt_max_iterations = 1000
+ relax_disp.Relax_disp(pipe_name='origin - relax_disp (Sun Feb 23
19:36:51 2014)', pipe_bundle='relax_disp (Sun Feb 23 19:36:51 2014)',
results_dir=self.tmpdir, models=['R2eff', 'No Rex'], grid_inc=11,
mc_sim_num=2, modsel='AIC', pre_run_dir=pre_run_dir, insignificance=1.0,
numeric_only=True, mc_sim_all_models=False, eliminate=True)
def test_curve_type_cpmg_fixed_time(self):
r22289 - in /trunk/test_suite: shared_data/dispersion/bug_21715_clustered_indexerror/ shared_data/dispersion/bug_21715_clust...