r22321 - /trunk/test_suite/system_tests/relax_disp.py -- February 26, 2014 - 08:36

Author: tlinnet
Date: Wed Feb 26 08:36:29 2014
New Revision: 22321

URL: http://svn.gna.org/viewcvs/relax?rev=22321&view=rev
Log:
Added system test for bug 21344.

Regarding bug #21344, (https://gna.org/bugs/index.php?21344) - Handling of in 
sparse acquired R1rho dataset with missing combinations of time and spin-lock 
field strengths.

This test will fail with:
No intensity data could be found corresponding to the spectrometer frequency 
of 799.7773991 MHz, dispersion point of 431.0 and relaxation time of 0.14 s.
Data for a dispersion point of 431.0 and time 0.14 does not exist, and so 
some of the looping in collecting data for calculation must be wrong.
This behaviour and probably its solution is related to bug 21665, "Running a 
CPMG analysis with two fields at two delay times" 
(https://gna.org/bugs/index.php?21665).

Modified:
    trunk/test_suite/system_tests/relax_disp.py

Modified: trunk/test_suite/system_tests/relax_disp.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/relax_disp.py?rev=22321&r1=22320&r2=22321&view=diff
==============================================================================
--- trunk/test_suite/system_tests/relax_disp.py (original)
+++ trunk/test_suite/system_tests/relax_disp.py Wed Feb 26 08:36:29 2014
@@ -265,6 +265,22 @@
         relax_disp.Relax_disp.opt_func_tol = 1e-5
         relax_disp.Relax_disp.opt_max_iterations = 1000
         relax_disp.Relax_disp(pipe_name="origin - relax_disp (Thu Jan  2 
13:46:44 2014)", pipe_bundle="relax_disp (Thu Jan  2 13:46:44 2014)", 
results_dir=self.tmpdir, models=['R2eff', 'No Rex', 'CR72', 'NS CPMG 2-site 
expanded'], grid_inc=3, mc_sim_num=5, modsel='AIC', pre_run_dir=None, 
insignificance=1.0, numeric_only=False, mc_sim_all_models=False, 
eliminate=True)
+
+
+    def test_bug_21344_cpmg_two_fields_two_delaytimes_fail_relax_disp(self):
+        """U{Bug #21665<https://gna.org/bugs/?21344>} catch, the failure of 
an analysis of a sparse acquired R1rho dataset with missing combinations of 
time and spin-lock field strengths using auto_analysis."""
+
+        # Clear the data store.
+        self.interpreter.reset()
+
+        # Load the state.
+        state = status.install_path + 
sep+'test_suite'+sep+'shared_data'+sep+'dispersion'+sep+'bug_21344.bz2'
+        self.interpreter.state.load(state, force=True)
+
+        # Execute the auto-analysis (fast).
+        relax_disp.Relax_disp.opt_func_tol = 1e-5
+        relax_disp.Relax_disp.opt_max_iterations = 1000
+        relax_disp.Relax_disp(pipe_name='base pipe', 
pipe_bundle='relax_disp', results_dir=self.tmpdir, models=['R2eff'], 
grid_inc=3, mc_sim_num=5, modsel='AIC', pre_run_dir=None, insignificance=1.0, 
numeric_only=False, mc_sim_all_models=False, eliminate=True)
 
 
     def test_bug_21665_cpmg_two_fields_two_delaytimes_fail_calc(self):