Author: bugman
Date: Wed Mar 26 22:28:12 2014
New Revision: 22553
URL: http://svn.gna.org/viewcvs/relax?rev=22553&view=rev
Log:
Redesign and standardisation of the peak intensity data structure throughout
all analyses in relax.
The various structures 'intensities', 'intensity_err', 'intensity_sim',
'sim_intensity', and
'intensity_bc' have all been renamed. The new structures are called
'peak_intensity',
'peak_intensity_err', 'peak_intensity_sim' and 'peak_intensity_bc'. This
allows the structure to be
processed as a standard parameter in the specific analysis API. One very
visible consequence is
that plots of peak intensities, as well as value files, will now have peak
intensity errors.
For backwards compatibility, the relax data store method _back_compat_hook()
has been modified to
catch all previous peak intensity object variants and to standardise and
rename these to the new
object names.
As the parameter is now called 'peak_intensity' rather than 'intensities',
all calls to the
grace.write and value.write for this parameter have been changed in the
auto-analyses, the sample
scripts, the test suite and the manual.
Modified:
trunk/auto_analyses/noe.py
trunk/auto_analyses/relax_disp.py
trunk/auto_analyses/relax_fit.py
trunk/data_store/__init__.py
trunk/docs/latex/curvefit.tex
trunk/docs/latex/noe.tex
trunk/pipe_control/spectrum.py
trunk/sample_scripts/noe.py
trunk/sample_scripts/relax_curve_diff.py
trunk/sample_scripts/relax_fit.py
trunk/specific_analyses/api_common.py
trunk/specific_analyses/noe/api.py
trunk/specific_analyses/relax_disp/api.py
trunk/specific_analyses/relax_disp/disp_data.py
trunk/specific_analyses/relax_disp/nessy.py
trunk/specific_analyses/relax_disp/optimisation.py
trunk/specific_analyses/relax_fit/__init__.py
trunk/test_suite/gui_tests/noe.py
trunk/test_suite/gui_tests/relax_disp.py
trunk/test_suite/shared_data/bruker_files/relax_fit_pdc_err.py
trunk/test_suite/shared_data/dispersion/error_testing/simulation.py
trunk/test_suite/system_tests/noe.py
trunk/test_suite/system_tests/peak_lists.py
trunk/test_suite/system_tests/relax_disp.py
trunk/test_suite/system_tests/relax_fit.py
trunk/test_suite/system_tests/scripts/1UBQ_relax_fit.py
trunk/test_suite/system_tests/scripts/noe/bug_21562_noe_replicate_fail.py
trunk/test_suite/system_tests/scripts/noe/noe.py
trunk/test_suite/system_tests/scripts/relax_fit.py
trunk/test_suite/unit_tests/_specific_analyses/test_api.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: trunk/auto_analyses/noe.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/auto_analyses/noe.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/auto_analyses/relax_disp.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/auto_analyses/relax_disp.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/auto_analyses/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/auto_analyses/relax_fit.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/data_store/__init__.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/data_store/__init__.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/docs/latex/curvefit.tex
URL:
http://svn.gna.org/viewcvs/relax/trunk/docs/latex/curvefit.tex?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/docs/latex/noe.tex
URL:
http://svn.gna.org/viewcvs/relax/trunk/docs/latex/noe.tex?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/pipe_control/spectrum.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/pipe_control/spectrum.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/sample_scripts/noe.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/sample_scripts/noe.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/sample_scripts/relax_curve_diff.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/sample_scripts/relax_curve_diff.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/sample_scripts/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/sample_scripts/relax_fit.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/specific_analyses/api_common.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/api_common.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/specific_analyses/noe/api.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/noe/api.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/specific_analyses/relax_disp/api.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/relax_disp/api.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/specific_analyses/relax_disp/disp_data.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/relax_disp/disp_data.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/specific_analyses/relax_disp/nessy.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/relax_disp/nessy.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/specific_analyses/relax_disp/optimisation.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/relax_disp/optimisation.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/specific_analyses/relax_fit/__init__.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/relax_fit/__init__.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/gui_tests/noe.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/gui_tests/noe.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/gui_tests/relax_disp.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/gui_tests/relax_disp.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/shared_data/bruker_files/relax_fit_pdc_err.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/bruker_files/relax_fit_pdc_err.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/shared_data/dispersion/error_testing/simulation.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/error_testing/simulation.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/system_tests/noe.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/noe.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/system_tests/peak_lists.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/peak_lists.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/system_tests/relax_disp.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/relax_disp.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/system_tests/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/relax_fit.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/system_tests/scripts/1UBQ_relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/scripts/1UBQ_relax_fit.py?rev=22553&r1=22552&r2=22553&view=diff
Modified:
trunk/test_suite/system_tests/scripts/noe/bug_21562_noe_replicate_fail.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/scripts/noe/bug_21562_noe_replicate_fail.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/system_tests/scripts/noe/noe.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/scripts/noe/noe.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/system_tests/scripts/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/scripts/relax_fit.py?rev=22553&r1=22552&r2=22553&view=diff
Modified: trunk/test_suite/unit_tests/_specific_analyses/test_api.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_specific_analyses/test_api.py?rev=22553&r1=22552&r2=22553&view=diff
r22553 - in /trunk: auto_analyses/ data_store/ docs/latex/ pipe_control/ sample_scripts/ specific_analyses/ specific_analyse...