mailr22915 - /trunk/specific_analyses/relax_disp/variables.py


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Posted by tlinnet on May 02, 2014 - 11:57:
Author: tlinnet
Date: Fri May  2 11:57:02 2014
New Revision: 22915

URL: http://svn.gna.org/viewcvs/relax?rev=22915&view=rev
Log:
Re-did ordering of Model B14 according to release year.

sr #3154: (https://gna.org/support/?3154) Implementation of Baldwin (2014) 
B14 model - 2-site exact solution model for all time scales.

"This follows the tutorial for adding relaxation dispersion models at:
http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax#Adding_the_model_to_the_list";

The B14 model is explained in: http://wiki.nmr-relax.com/B14.

Modified:
    trunk/specific_analyses/relax_disp/variables.py

Modified: trunk/specific_analyses/relax_disp/variables.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/relax_disp/variables.py?rev=22915&r1=22914&r2=22915&view=diff
==============================================================================
--- trunk/specific_analyses/relax_disp/variables.py     (original)
+++ trunk/specific_analyses/relax_disp/variables.py     Fri May  2 11:57:02 
2014
@@ -175,16 +175,16 @@
 
 
 # The model lists.
-MODEL_LIST_DISP = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_B14, 
MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_M61, 
MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, 
MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, 
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, 
MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_3SITE, 
MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_MMQ_CR72, MODEL_NS_MMQ_2SITE, 
MODEL_NS_MMQ_3SITE, MODEL_NS_MMQ_3SITE_LINEAR]
+MODEL_LIST_DISP = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, 
MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_B14, MODEL_M61, MODEL_M61B, 
MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_CPMG_2SITE_3D, 
MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, 
MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, 
MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_3SITE, MODEL_NS_R1RHO_3SITE_LINEAR, 
MODEL_MMQ_CR72, MODEL_NS_MMQ_2SITE, MODEL_NS_MMQ_3SITE, 
MODEL_NS_MMQ_3SITE_LINEAR]
 """The list of all dispersion models (excluding the R2eff model)."""
 
-MODEL_LIST_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, 
MODEL_B14, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_M61, 
MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, 
MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, 
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, 
MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_3SITE, 
MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_MMQ_CR72, MODEL_NS_MMQ_2SITE, 
MODEL_NS_MMQ_3SITE, MODEL_NS_MMQ_3SITE_LINEAR]
+MODEL_LIST_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, 
MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_B14, MODEL_M61, 
MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, 
MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, 
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, 
MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_3SITE, 
MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_MMQ_CR72, MODEL_NS_MMQ_2SITE, 
MODEL_NS_MMQ_3SITE, MODEL_NS_MMQ_3SITE_LINEAR]
 """The list of the R2eff model together with all dispersion models."""
 
-MODEL_LIST_CPMG = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_B14, 
MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, 
MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, 
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, 
MODEL_NS_CPMG_2SITE_EXPANDED]
+MODEL_LIST_CPMG = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, 
MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_B14, 
MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, 
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, 
MODEL_NS_CPMG_2SITE_EXPANDED]
 """The list of all dispersion models specifically for CPMG-type experiments 
(excluding the R2eff model)."""
 
-MODEL_LIST_CPMG_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, 
MODEL_LM63_3SITE, MODEL_B14, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, 
MODEL_TSMFK01, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, 
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, 
MODEL_NS_CPMG_2SITE_EXPANDED]
+MODEL_LIST_CPMG_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, 
MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, 
MODEL_B14, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, 
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, 
MODEL_NS_CPMG_2SITE_EXPANDED]
 """The list of the R2eff model together with all dispersion models 
specifically for CPMG-type experiments."""
 
 MODEL_LIST_R1RHO = [MODEL_NOREX, MODEL_M61, MODEL_M61B, MODEL_DPL94, 
MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_R1RHO_2SITE, 
MODEL_NS_R1RHO_3SITE, MODEL_NS_R1RHO_3SITE_LINEAR]
@@ -202,7 +202,7 @@
 MODEL_LIST_MMQ = [MODEL_MMQ_CR72, MODEL_NS_MMQ_2SITE, MODEL_NS_MMQ_3SITE, 
MODEL_NS_MMQ_3SITE_LINEAR]
 """The list of all dispersion models specifically for MMQ CPMG-type 
experiments."""
 
-MODEL_LIST_ANALYTIC = [MODEL_LM63, MODEL_LM63_3SITE, MODEL_B14, MODEL_CR72, 
MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_M61, MODEL_M61B, 
MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MMQ_CR72, MODEL_MP05]
+MODEL_LIST_ANALYTIC = [MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, 
MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_B14, MODEL_M61, MODEL_M61B, 
MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MMQ_CR72, MODEL_MP05]
 """The list of all analytic models."""
 
 MODEL_LIST_NUMERIC = [MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, 
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, 
MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_3SITE, 
MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_NS_MMQ_2SITE, MODEL_NS_MMQ_3SITE, 
MODEL_NS_MMQ_3SITE_LINEAR]
@@ -217,11 +217,11 @@
     MODEL_NOREX: MODEL_DESC_NOREX,
     MODEL_LM63: MODEL_DESC_LM63,
     MODEL_LM63_3SITE: MODEL_DESC_LM63_3SITE,
-    MODEL_B14: MODEL_DESC_B14,
     MODEL_CR72: MODEL_DESC_CR72,
     MODEL_CR72_FULL: MODEL_DESC_CR72_FULL,
     MODEL_IT99: MODEL_DESC_IT99,
     MODEL_TSMFK01: MODEL_DESC_TSMFK01,
+    MODEL_B14: MODEL_DESC_B14,
     MODEL_M61: MODEL_DESC_M61,
     MODEL_M61B: MODEL_DESC_M61B,
     MODEL_DPL94: MODEL_DESC_DPL94,
@@ -248,11 +248,11 @@
     MODEL_NOREX: MODEL_PARAMS_NOREX,
     MODEL_LM63: MODEL_PARAMS_LM63,
     MODEL_LM63_3SITE: MODEL_PARAMS_LM63_3SITE,
-    MODEL_B14: MODEL_PARAMS_B14,
     MODEL_CR72: MODEL_PARAMS_CR72,
     MODEL_CR72_FULL: MODEL_PARAMS_CR72_FULL,
     MODEL_IT99: MODEL_PARAMS_IT99,
     MODEL_TSMFK01: MODEL_PARAMS_TSMFK01,
+    MODEL_B14: MODEL_PARAMS_B14,
     MODEL_M61: MODEL_PARAMS_M61,
     MODEL_M61B: MODEL_PARAMS_M61B,
     MODEL_DPL94: MODEL_PARAMS_DPL94,




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