Author: tlinnet Date: Mon May 5 20:18:04 2014 New Revision: 22960 URL: http://svn.gna.org/viewcvs/relax?rev=22960&view=rev Log: Changed float powers of 2. to integer powers of 2, to speed up the calculations. sr #3154: (https://gna.org/support/?3154) Implementation of Baldwin (2014) B14 model - 2-site exact solution model for all time scales. This change did not do a large change in speed, but is more proper. This follows the tutorial for adding relaxation dispersion models at: http://wiki.nmr-relax.com/Tutorial_for_adding_relaxation_dispersion_models_to_relax#Debugging Modified: trunk/lib/dispersion/b14.py Modified: trunk/lib/dispersion/b14.py URL: http://svn.gna.org/viewcvs/relax/trunk/lib/dispersion/b14.py?rev=22960&r1=22959&r2=22960&view=diff ============================================================================== --- trunk/lib/dispersion/b14.py (original) +++ trunk/lib/dispersion/b14.py Mon May 5 20:18:04 2014 @@ -151,18 +151,18 @@ ######################################################################### #get the real and imaginary components of the exchange induced shift g1=2*dw*(deltaR2+keg-kge) #same as carver richards zeta - g2=(deltaR2+keg-kge)**2.0+4*keg*kge-dw**2 #same as carver richards psi - g3=cos(0.5*atan2(g1,g2))*(g1**2.0+g2**2.0)**(1/4.0) #trig faster than square roots - g4=sin(0.5*atan2(g1,g2))*(g1**2.0+g2**2.0)**(1/4.0) #trig faster than square roots + g2=(deltaR2+keg-kge)**2+4*keg*kge-dw**2 #same as carver richards psi + g3=cos(0.5*atan2(g1,g2))*(g1**2+g2**2)**(1/4.0) #trig faster than square roots + g4=sin(0.5*atan2(g1,g2))*(g1**2+g2**2)**(1/4.0) #trig faster than square roots ######################################################################### #time independent factors N=complex(kge+g3-kge,g4) #N=oG+oE - NNc=(g3**2.+g4**2.) - f0=(dw**2.+g3**2.)/(NNc) #f0 - f2=(dw**2.-g4**2.)/(NNc) #f2 + NNc=(g3**2+g4**2) + f0=(dw**2+g3**2)/(NNc) #f0 + f2=(dw**2-g4**2)/(NNc) #f2 #t1=(-dw+g4)*(complex(-dw,-g3))/(NNc) #t1 t2=(dw+g4)*(complex(dw,-g3))/(NNc) #t2 - t1pt2=complex(2*dw**2.,-g1)/(NNc) #t1+t2 + t1pt2=complex(2*dw**2,-g1)/(NNc) #t1+t2 oGt2=complex((deltaR2+keg-kge-g3),(dw-g4))*t2 #-2*oG*t2 Rpre=(R2g+R2e+kex)/2.0 #-1/Trel*log(LpreDyn) E0= 2.0*tcp*g3 #derived from relaxation #E0=-2.0*tcp*(f00R-f11R) @@ -171,7 +171,7 @@ ex0b=(f0*numpy.cosh(E0)-f2*numpy.cos(E2)) #real ex0c=(f0*numpy.sinh(E0)-f2*numpy.sin(E2)*complex(0,1.)) #complex ex1c=(numpy.sinh(E1)) #complex - v3=numpy.sqrt(ex0b**2.-1) #exact result for v2v3 + v3=numpy.sqrt(ex0b**2-1) #exact result for v2v3 y=numpy.power((ex0b-v3)/(ex0b+v3),ncyc) v2pPdN=(( complex(deltaR2+kex,dw) )*ex0c+(-oGt2-kge*t1pt2)*2*ex1c) #off diagonal common factor. sinh fuctions Tog=(((1+y)/2+(1-y)/(2*v3)*(v2pPdN)/N))