Author: tlinnet
Date: Wed Jun 18 16:48:50 2014
New Revision: 24100
URL: http://svn.gna.org/viewcvs/relax?rev=24100&view=rev
Log:
Added profiling script for NS R1rho 2site.
Task #7807 (https://gna.org/task/index.php?7807): Speed-up of dispersion
models for Clustered analysis.
Modified:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_2site.py
Modified:
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_2site.py
URL:
http://svn.gna.org/viewcvs/relax/branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_2site.py?rev=24100&r1=24099&r2=24100&view=diff
==============================================================================
---
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_2site.py
(original)
+++
branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_2site.py
Wed Jun 18 16:48:50 2014
@@ -63,7 +63,7 @@
def main():
if True:
# Nr of iterations.
- nr_iter = 1000
+ nr_iter = 10
# Print statistics.
verbose = True
@@ -523,11 +523,11 @@
"""
# Return chi2 value.
- chi2 = self.model.func_DPL94(params)
+ chi2 = self.model.func_ns_r1rho_2site(params)
return chi2
-def single(num_spins=1, model=MODEL_DPL94, iter=None):
+def single(num_spins=1, model=MODEL_NS_R1RHO_2SITE, iter=None):
"""Calculate for a single spin.
@keyword num_spins: Number of spins in the cluster.
@@ -541,7 +541,7 @@
"""
# Instantiate class
- C1 = Profile(num_spins=num_spins, model=model, r2=5.0, phi_ex=1.0,
kex=5000.0, spins_params=['r2', 'phi_ex', 'kex'])
+ C1 = Profile(num_spins=num_spins, model=model, r2=5.0, dw=1.0, pA=0.9,
kex=5000.0, spins_params=['r2', 'dw', 'pA', 'kex'])
# Loop 100 times for each spin in the clustered analysis (to make the
timing numbers equivalent).
for spin_index in xrange(100):
@@ -551,7 +551,7 @@
print("chi2 single:", chi2)
-def cluster(num_spins=100, model=MODEL_DPL94, iter=None):
+def cluster(num_spins=100, model=MODEL_NS_R1RHO_2SITE, iter=None):
"""Calculate for a number of clustered spins.
@keyword num_spins: Number of spins in the cluster.
@@ -565,7 +565,7 @@
"""
# Instantiate class
- C1 = Profile(num_spins=num_spins, model=model, r2=5.0, phi_ex=1.0,
kex=5000.0, spins_params=['r2', 'phi_ex', 'kex'])
+ C1 = Profile(num_spins=num_spins, model=model, r2=5.0, dw=1.0, pA=0.9,
kex=5000.0, spins_params=['r2', 'dw', 'pA', 'kex'])
# Repeat the function call, to simulate minimisation.
for i in xrange(iter):
r24100 - /branches/disp_spin_speed/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_2site.py