Author: tlinnet Date: Mon Aug 4 16:27:23 2014 New Revision: 24919 URL: http://svn.gna.org/viewcvs/relax?rev=24919&view=rev Log: Added the model "MODEL_DPL94_FIT_R1", to the full list of models. sr #3135(https://gna.org/support/?3135): Optimisation of the R1 relaxation rate for the off-resonance R1rho relaxation dispersion models. Modified: branches/R1_fitting/specific_analyses/relax_disp/variables.py Modified: branches/R1_fitting/specific_analyses/relax_disp/variables.py URL: http://svn.gna.org/viewcvs/relax/branches/R1_fitting/specific_analyses/relax_disp/variables.py?rev=24919&r1=24918&r2=24919&view=diff ============================================================================== --- branches/R1_fitting/specific_analyses/relax_disp/variables.py (original) +++ branches/R1_fitting/specific_analyses/relax_disp/variables.py Mon Aug 4 16:27:23 2014 @@ -109,6 +109,11 @@ MODEL_DESC_DPL94 = "The Davis, Perlman and London (1994) extension of the Meiboom (1961) model for off-resonance data." MODEL_PARAMS_DPL94 = ['r2', 'phi_ex', 'kex'] +MODEL_DPL94_FIT_R1 = "%s_fit_r1"%MODEL_DPL94 +"""The R1rho 2-site fast exchange model of Davis, Perlman and London (1994), where R1 is fitted.""" +MODEL_DESC_DPL94_FIT_R1 = "The Davis, Perlman and London (1994) extension of the Meiboom (1961) model for off-resonance data, where R1 is fitted." +MODEL_PARAMS_DPL94_FIT_R1 = ['r1_fit', 'r2', 'phi_ex', 'kex'] + MODEL_TP02 = 'TP02' MODEL_DESC_TP02 = "The Trott and Palmer (2002) off-resonance 2-site model for R1rho-type experiments." MODEL_PARAMS_TP02 = ['r2', 'pA', 'dw', 'kex'] @@ -182,7 +187,7 @@ MODEL_LIST_DISP = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_B14, MODEL_B14_FULL, MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_3SITE, MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_MMQ_CR72, MODEL_NS_MMQ_2SITE, MODEL_NS_MMQ_3SITE, MODEL_NS_MMQ_3SITE_LINEAR] """The list of all dispersion models (excluding the R2eff model).""" -MODEL_LIST_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_B14, MODEL_B14_FULL, MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_3SITE, MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_MMQ_CR72, MODEL_NS_MMQ_2SITE, MODEL_NS_MMQ_3SITE, MODEL_NS_MMQ_3SITE_LINEAR] +MODEL_LIST_FULL = [MODEL_R2EFF, MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_B14, MODEL_B14_FULL, MODEL_M61, MODEL_M61B, MODEL_DPL94, MODEL_DPL94_FIT_R1, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_3SITE, MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_MMQ_CR72, MODEL_NS_MMQ_2SITE, MODEL_NS_MMQ_3SITE, MODEL_NS_MMQ_3SITE_LINEAR] """The list of the R2eff model together with all dispersion models.""" MODEL_LIST_CPMG = [MODEL_NOREX, MODEL_LM63, MODEL_LM63_3SITE, MODEL_CR72, MODEL_CR72_FULL, MODEL_IT99, MODEL_TSMFK01, MODEL_B14, MODEL_B14_FULL, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_CPMG_2SITE_EXPANDED] @@ -233,6 +238,7 @@ MODEL_M61: MODEL_DESC_M61, MODEL_M61B: MODEL_DESC_M61B, MODEL_DPL94: MODEL_DESC_DPL94, + MODEL_DPL94_FIT_R1: MODEL_DESC_DPL94_FIT_R1, MODEL_TP02: MODEL_DESC_TP02, MODEL_TAP03: MODEL_DESC_TAP03, MODEL_MP05: MODEL_DESC_MP05, @@ -265,6 +271,7 @@ MODEL_M61: MODEL_PARAMS_M61, MODEL_M61B: MODEL_PARAMS_M61B, MODEL_DPL94: MODEL_PARAMS_DPL94, + MODEL_DPL94_FIT_R1: MODEL_PARAMS_DPL94_FIT_R1, MODEL_TP02: MODEL_PARAMS_TP02, MODEL_TAP03: MODEL_PARAMS_TAP03, MODEL_MP05: MODEL_PARAMS_MP05,