mailr25074 - /trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/


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Posted by edward on August 19, 2014 - 15:03:
Author: bugman
Date: Tue Aug 19 15:03:28 2014
New Revision: 25074

URL: http://svn.gna.org/viewcvs/relax?rev=25074&view=rev
Log:
Added a relaxation dispersion example to show how certain literature 
statements are just utter crap!

This follows from 
http://thread.gmane.org/gmane.science.nmr.relax.scm/22774/focus=6693, and the
commit r25024 (http://thread.gmane.org/gmane.science.nmr.relax.scm/22774) 
which implement such
dangerous literature conjectures.  To see how a real minimum is excluded from 
the optimisation
space, here for residue :2, execute the R1rho_analysis.py script in relax.

This is synthetic data generated with kex = 1e5 assuming the model TP02.  For 
the case of residue
:2, this still produces an optimisable minimum in the space and dispersion 
curves.  However r25024
blocks optimisation to the minimum.


Added:
    trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/
      - copied from r25065, 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02/
Modified:
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/R1rho_analysis.py
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/generate.log
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/generate.py
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1000.0_500MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1000.0_800MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1500.0_500MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1500.0_800MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2000.0_500MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2000.0_800MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2500.0_500MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2500.0_800MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3000.0_500MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3000.0_800MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3500.0_500MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3500.0_800MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4000.0_500MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4000.0_800MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4500.0_500MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4500.0_800MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5000.0_500MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5000.0_800MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5500.0_500MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5500.0_800MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_6000.0_500MHz.list
    
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_6000.0_800MHz.list

[This mail would be too long, it was shortened to contain the URLs only.]

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/R1rho_analysis.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/R1rho_analysis.py?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/generate.log
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/generate.log?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/generate.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/generate.py?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1000.0_500MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1000.0_500MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1000.0_800MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1000.0_800MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1500.0_500MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1500.0_500MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1500.0_800MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_1500.0_800MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2000.0_500MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2000.0_500MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2000.0_800MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2000.0_800MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2500.0_500MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2500.0_500MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2500.0_800MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_2500.0_800MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3000.0_500MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3000.0_500MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3000.0_800MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3000.0_800MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3500.0_500MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3500.0_500MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3500.0_800MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_3500.0_800MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4000.0_500MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4000.0_500MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4000.0_800MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4000.0_800MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4500.0_500MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4500.0_500MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4500.0_800MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_4500.0_800MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5000.0_500MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5000.0_500MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5000.0_800MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5000.0_800MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5500.0_500MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5500.0_500MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5500.0_800MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_5500.0_800MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_6000.0_500MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_6000.0_500MHz.list?rev=25074&r1=25065&r2=25074&view=diff

Modified: 
trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_6000.0_800MHz.list
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/r1rho_off_res_tp02_high_kex/nu_6000.0_800MHz.list?rev=25074&r1=25065&r2=25074&view=diff

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