Author: tlinnet
Date: Tue Aug 19 15:23:28 2014
New Revision: 25076
URL: http://svn.gna.org/viewcvs/relax?rev=25076&view=rev
Log:
Added unit test for the new function which determine how parameters are
copied for a nested model parameters.
Modified:
trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py
Modified:
trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py?rev=25076&r1=25075&r2=25076&view=diff
==============================================================================
--- trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py
(original)
+++ trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py
Tue Aug 19 15:23:28 2014
@@ -20,8 +20,9 @@
###############################################################################
# relax module imports.
-from specific_analyses.relax_disp.model import nesting_model, sort_models
+from specific_analyses.relax_disp.model import nesting_model, nesting_param,
sort_models
from specific_analyses.relax_disp.variables import MODEL_B14,
MODEL_B14_FULL, MODEL_CR72, MODEL_CR72_FULL, MODEL_DPL94_FIT_R1, MODEL_IT99,
MODEL_MMQ_CR72, MODEL_LM63, MODEL_LM63_3SITE, MODEL_MP05_FIT_R1, MODEL_NOREX,
MODEL_NOREX_R1RHO_FIT_R1, MODEL_NS_CPMG_2SITE_3D,
MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_EXPANDED,
MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_MMQ_2SITE,
MODEL_NS_MMQ_3SITE, MODEL_NS_MMQ_3SITE_LINEAR, MODEL_NS_R1RHO_2SITE,
MODEL_NS_R1RHO_2SITE_FIT_R1, MODEL_NS_R1RHO_3SITE,
MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_R2EFF, MODEL_TAP03_FIT_R1,
MODEL_TP02_FIT_R1, MODEL_TSMFK01
+from specific_analyses.relax_disp.variables import MODEL_PARAMS_B14_FULL,
MODEL_PARAMS_CR72, MODEL_PARAMS_CR72_FULL, MODEL_PARAMS_LM63,
MODEL_PARAMS_LM63_3SITE, MODEL_PARAMS_MMQ_CR72, MODEL_PARAMS_MP05_FIT_R1,
MODEL_PARAMS_NS_MMQ_2SITE, MODEL_PARAMS_NS_MMQ_3SITE,
MODEL_PARAMS_NS_MMQ_3SITE_LINEAR, MODEL_PARAMS_NS_R1RHO_2SITE,
MODEL_PARAMS_NS_R1RHO_3SITE, MODEL_PARAMS_NS_R1RHO_3SITE_LINEAR,
MODEL_PARAMS_TAP03_FIT_R1
from test_suite.unit_tests.base_classes import UnitTestCase
@@ -409,6 +410,261 @@
self.assertEqual(nesting_model(self_models=self_models,
model=model)[1], model_nest)
+ def test_nesting_param_1(self):
+ """Unit test of function nesting_param, which determine how model
parameters are converted for nesting."""
+
+ # Define parameters
+ model_params = MODEL_PARAMS_LM63_3SITE
+ nested_model_params = MODEL_PARAMS_LM63
+
+ # Get the dictionary of parameter conversion.
+ par_dic = nesting_param(model_params=model_params,
nested_model_params=nested_model_params)
+
+ # Test the number of elements in the dictionary.
+ self.assertEqual(len(par_dic), len(model_params))
+
+ print("model parameters", model_params)
+ print("nested_model_params", nested_model_params)
+
+ # Test content of dictionary.
+ self.assertEqual(par_dic['r2'], 'r2')
+ self.assertEqual(par_dic['phi_ex_B'], 'phi_ex')
+ self.assertEqual(par_dic['phi_ex_C'], 'phi_ex')
+ self.assertEqual(par_dic['kB'], 'kex')
+ self.assertEqual(par_dic['kC'], 'kex')
+
+
+ def test_nesting_param_2(self):
+ """Unit test of function nesting_param, which determine how model
parameters are converted for nesting."""
+
+ # Define parameters
+ model_params = MODEL_PARAMS_CR72_FULL
+ nested_model_params = MODEL_PARAMS_CR72
+
+ # Get the dictionary of parameter conversion.
+ par_dic = nesting_param(model_params=model_params,
nested_model_params=nested_model_params)
+
+ # Test the number of elements in the dictionary.
+ self.assertEqual(len(par_dic), len(model_params))
+
+ print("model parameters", model_params)
+ print("nested_model_params", nested_model_params)
+
+ # Test content of dictionary.
+ self.assertEqual(par_dic['r2a'], 'r2')
+ self.assertEqual(par_dic['r2b'], 'r2')
+ self.assertEqual(par_dic['pA'], 'pA')
+ self.assertEqual(par_dic['dw'], 'dw')
+ self.assertEqual(par_dic['kex'], 'kex')
+
+
+ def test_nesting_param_3(self):
+ """Unit test of function nesting_param, which determine how model
parameters are converted for nesting."""
+
+ # Define parameters
+ model_params = MODEL_PARAMS_CR72
+ nested_model_params = MODEL_PARAMS_CR72_FULL
+
+ # Get the dictionary of parameter conversion.
+ par_dic = nesting_param(model_params=model_params,
nested_model_params=nested_model_params)
+
+ # Test the number of elements in the dictionary.
+ self.assertEqual(len(par_dic), len(model_params))
+
+ print("model parameters", model_params)
+ print("nested_model_params", nested_model_params)
+
+ # Test content of dictionary.
+ self.assertEqual(par_dic['r2'], 'r2a')
+ self.assertEqual(par_dic['pA'], 'pA')
+ self.assertEqual(par_dic['dw'], 'dw')
+ self.assertEqual(par_dic['kex'], 'kex')
+
+
+ def test_nesting_param_4(self):
+ """Unit test of function nesting_param, which determine how model
parameters are converted for nesting."""
+
+ # Define parameters
+ model_params = MODEL_PARAMS_B14_FULL
+ nested_model_params = MODEL_PARAMS_CR72_FULL
+
+ # Get the dictionary of parameter conversion.
+ par_dic = nesting_param(model_params=model_params,
nested_model_params=nested_model_params)
+
+ # Test the number of elements in the dictionary.
+ self.assertEqual(len(par_dic), len(model_params))
+
+ print("model parameters", model_params)
+ print("nested_model_params", nested_model_params)
+
+ # Test content of dictionary.
+ self.assertEqual(par_dic['r2a'], 'r2a')
+ self.assertEqual(par_dic['r2b'], 'r2b')
+ self.assertEqual(par_dic['pA'], 'pA')
+ self.assertEqual(par_dic['dw'], 'dw')
+ self.assertEqual(par_dic['kex'], 'kex')
+
+
+ def test_nesting_param_5(self):
+ """Unit test of function nesting_param, which determine how model
parameters are converted for nesting."""
+
+ # Define parameters
+ model_params = MODEL_PARAMS_TAP03_FIT_R1
+ nested_model_params = MODEL_PARAMS_MP05_FIT_R1
+
+ # Get the dictionary of parameter conversion.
+ par_dic = nesting_param(model_params=model_params,
nested_model_params=nested_model_params)
+
+ # Test the number of elements in the dictionary.
+ self.assertEqual(len(par_dic), len(model_params))
+
+ print("model parameters", model_params)
+ print("nested_model_params", nested_model_params)
+
+ # Test content of dictionary.
+ self.assertEqual(par_dic['r1'], 'r1')
+ self.assertEqual(par_dic['r2'], 'r2')
+ self.assertEqual(par_dic['pA'], 'pA')
+ self.assertEqual(par_dic['dw'], 'dw')
+ self.assertEqual(par_dic['kex'], 'kex')
+
+
+ def test_nesting_param_6(self):
+ """Unit test of function nesting_param, which determine how model
parameters are converted for nesting."""
+
+ # Define parameters
+ model_params = MODEL_PARAMS_NS_R1RHO_3SITE
+ nested_model_params = MODEL_PARAMS_NS_R1RHO_3SITE_LINEAR
+
+ # Get the dictionary of parameter conversion.
+ par_dic = nesting_param(model_params=model_params,
nested_model_params=nested_model_params)
+
+ # Test the number of elements in the dictionary.
+ self.assertEqual(len(par_dic), len(model_params))
+
+ print("model parameters", model_params)
+ print("nested_model_params", nested_model_params)
+
+ # Test content of dictionary.
+ self.assertEqual(par_dic['r2'], 'r2')
+ self.assertEqual(par_dic['pA'], 'pA')
+ self.assertEqual(par_dic['dw_AB'], 'dw_AB')
+ self.assertEqual(par_dic['kex_AB'], 'kex_AB')
+ self.assertEqual(par_dic['pB'], 'pB')
+ self.assertEqual(par_dic['dw_BC'], 'dw_BC')
+ self.assertEqual(par_dic['kex_BC'], 'kex_BC')
+ self.assertEqual(par_dic['kex_AC'], None)
+
+
+ def test_nesting_param_7(self):
+ """Unit test of function nesting_param, which determine how model
parameters are converted for nesting."""
+
+ # Define parameters
+ model_params = MODEL_PARAMS_NS_R1RHO_3SITE
+ nested_model_params = MODEL_PARAMS_NS_R1RHO_2SITE
+
+ # Get the dictionary of parameter conversion.
+ par_dic = nesting_param(model_params=model_params,
nested_model_params=nested_model_params)
+
+ # Test the number of elements in the dictionary.
+ self.assertEqual(len(par_dic), len(model_params))
+
+ print("model parameters", model_params)
+ print("nested_model_params", nested_model_params)
+
+ # Test content of dictionary.
+ self.assertEqual(par_dic['r2'], 'r2')
+ self.assertEqual(par_dic['pA'], 'pA')
+ self.assertEqual(par_dic['dw_AB'], None)
+ self.assertEqual(par_dic['kex_AB'], None)
+ self.assertEqual(par_dic['pB'], None)
+ self.assertEqual(par_dic['dw_BC'], None)
+ self.assertEqual(par_dic['kex_BC'], None)
+ self.assertEqual(par_dic['kex_AC'], None)
+
+
+ def test_nesting_param_8(self):
+ """Unit test of function nesting_param, which determine how model
parameters are converted for nesting."""
+
+ # Define parameters
+ model_params = MODEL_PARAMS_NS_MMQ_2SITE
+ nested_model_params = MODEL_PARAMS_MMQ_CR72
+
+ # Get the dictionary of parameter conversion.
+ par_dic = nesting_param(model_params=model_params,
nested_model_params=nested_model_params)
+
+ # Test the number of elements in the dictionary.
+ self.assertEqual(len(par_dic), len(model_params))
+
+ print("model parameters", model_params)
+ print("nested_model_params", nested_model_params)
+
+ # Test content of dictionary.
+ self.assertEqual(par_dic['r2'], 'r2')
+ self.assertEqual(par_dic['pA'], 'pA')
+ self.assertEqual(par_dic['dw'], 'dw')
+ self.assertEqual(par_dic['dwH'], 'dwH')
+ self.assertEqual(par_dic['kex'], 'kex')
+
+
+ def test_nesting_param_9(self):
+ """Unit test of function nesting_param, which determine how model
parameters are converted for nesting."""
+
+ # Define parameters
+ model_params = MODEL_PARAMS_NS_MMQ_3SITE
+ nested_model_params = MODEL_PARAMS_NS_MMQ_3SITE_LINEAR
+
+ # Get the dictionary of parameter conversion.
+ par_dic = nesting_param(model_params=model_params,
nested_model_params=nested_model_params)
+
+ # Test the number of elements in the dictionary.
+ self.assertEqual(len(par_dic), len(model_params))
+
+ print("model parameters", model_params)
+ print("nested_model_params", nested_model_params)
+
+ # Test content of dictionary.
+ self.assertEqual(par_dic['r2'], 'r2')
+ self.assertEqual(par_dic['pA'], 'pA')
+ self.assertEqual(par_dic['dw_AB'], 'dw_AB')
+ self.assertEqual(par_dic['dwH_AB'], 'dwH_AB')
+ self.assertEqual(par_dic['kex_AB'], 'kex_AB')
+ self.assertEqual(par_dic['pB'], 'pB')
+ self.assertEqual(par_dic['dw_BC'], 'dw_BC')
+ self.assertEqual(par_dic['dwH_BC'], 'dwH_BC')
+ self.assertEqual(par_dic['kex_BC'], 'kex_BC')
+ self.assertEqual(par_dic['kex_AC'], None)
+
+
+ def test_nesting_param_10(self):
+ """Unit test of function nesting_param, which determine how model
parameters are converted for nesting."""
+
+ # Define parameters
+ model_params = MODEL_PARAMS_NS_MMQ_3SITE
+ nested_model_params = MODEL_PARAMS_NS_MMQ_2SITE
+
+ # Get the dictionary of parameter conversion.
+ par_dic = nesting_param(model_params=model_params,
nested_model_params=nested_model_params)
+
+ # Test the number of elements in the dictionary.
+ self.assertEqual(len(par_dic), len(model_params))
+
+ print("model parameters", model_params)
+ print("nested_model_params", nested_model_params)
+
+ # Test content of dictionary.
+ self.assertEqual(par_dic['r2'], 'r2')
+ self.assertEqual(par_dic['pA'], 'pA')
+ self.assertEqual(par_dic['dw_AB'], None)
+ self.assertEqual(par_dic['dwH_AB'], None)
+ self.assertEqual(par_dic['kex_AB'], None)
+ self.assertEqual(par_dic['pB'], None)
+ self.assertEqual(par_dic['dw_BC'], None)
+ self.assertEqual(par_dic['dwH_BC'], None)
+ self.assertEqual(par_dic['kex_BC'], None)
+ self.assertEqual(par_dic['kex_AC'], None)
+
+
def test_sort_models(self):
"""Unit test of function sort_models, which determine how to sort
models for auto analyses."""
r25076 - /trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py