Author: bugman Date: Thu Aug 21 11:05:12 2014 New Revision: 25156 URL: http://svn.gna.org/viewcvs/relax?rev=25156&view=rev Log: Removed all of the MODEL_*_FIT_R1 from the remaining unit tests. These are for the tests of the specific_analyses.relax_disp.model module. Modified: trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py Modified: trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py URL: http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py?rev=25156&r1=25155&r2=25156&view=diff ============================================================================== --- trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py (original) +++ trunk/test_suite/unit_tests/_specific_analyses/_relax_disp/test_model.py Thu Aug 21 11:05:12 2014 @@ -21,8 +21,8 @@ # relax module imports. from specific_analyses.relax_disp.model import nesting_model, nesting_param, sort_models -from specific_analyses.relax_disp.variables import MODEL_B14, MODEL_B14_FULL, MODEL_CR72, MODEL_CR72_FULL, MODEL_DPL94_FIT_R1, MODEL_IT99, MODEL_MMQ_CR72, MODEL_LM63, MODEL_LM63_3SITE, MODEL_MP05_FIT_R1, MODEL_NOREX, MODEL_NOREX_R1RHO_FIT_R1, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_MMQ_2SITE, MODEL_NS_MMQ_3SITE, MODEL_NS_MMQ_3SITE_LINEAR, MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_2SITE_FIT_R1, MODEL_NS_R1RHO_3SITE, MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_R2EFF, MODEL_TAP03_FIT_R1, MODEL_TP02_FIT_R1, MODEL_TSMFK01 -from specific_analyses.relax_disp.variables import MODEL_PARAMS_B14_FULL, MODEL_PARAMS_CR72, MODEL_PARAMS_CR72_FULL, MODEL_PARAMS_LM63, MODEL_PARAMS_LM63_3SITE, MODEL_PARAMS_MMQ_CR72, MODEL_PARAMS_MP05_FIT_R1, MODEL_PARAMS_NS_MMQ_2SITE, MODEL_PARAMS_NS_MMQ_3SITE, MODEL_PARAMS_NS_MMQ_3SITE_LINEAR, MODEL_PARAMS_NS_R1RHO_2SITE, MODEL_PARAMS_NS_R1RHO_3SITE, MODEL_PARAMS_NS_R1RHO_3SITE_LINEAR, MODEL_PARAMS_TAP03_FIT_R1 +from specific_analyses.relax_disp.variables import MODEL_B14, MODEL_B14_FULL, MODEL_CR72, MODEL_CR72_FULL, MODEL_DPL94, MODEL_IT99, MODEL_MMQ_CR72, MODEL_LM63, MODEL_LM63_3SITE, MODEL_MP05, MODEL_NOREX, MODEL_NOREX_R1RHO, MODEL_NS_CPMG_2SITE_3D, MODEL_NS_CPMG_2SITE_3D_FULL, MODEL_NS_CPMG_2SITE_EXPANDED, MODEL_NS_CPMG_2SITE_STAR, MODEL_NS_CPMG_2SITE_STAR_FULL, MODEL_NS_MMQ_2SITE, MODEL_NS_MMQ_3SITE, MODEL_NS_MMQ_3SITE_LINEAR, MODEL_NS_R1RHO_2SITE, MODEL_NS_R1RHO_3SITE, MODEL_NS_R1RHO_3SITE_LINEAR, MODEL_R2EFF, MODEL_TAP03, MODEL_TP02, MODEL_TSMFK01 +from specific_analyses.relax_disp.variables import MODEL_PARAMS_B14_FULL, MODEL_PARAMS_CR72, MODEL_PARAMS_CR72_FULL, MODEL_PARAMS_LM63, MODEL_PARAMS_LM63_3SITE, MODEL_PARAMS_MMQ_CR72, MODEL_PARAMS_MP05, MODEL_PARAMS_NS_MMQ_2SITE, MODEL_PARAMS_NS_MMQ_3SITE, MODEL_PARAMS_NS_MMQ_3SITE_LINEAR, MODEL_PARAMS_NS_R1RHO_2SITE, MODEL_PARAMS_NS_R1RHO_3SITE, MODEL_PARAMS_NS_R1RHO_3SITE_LINEAR, MODEL_PARAMS_TAP03 from test_suite.unit_tests.base_classes import UnitTestCase @@ -337,13 +337,13 @@ def test_nesting_model_r1rho_1(self): """Unit test of function nesting_model, which determine which model to nest from, testing for R1rho experiments.""" - ## Test MODEL_MP05_FIT_R1 model request, when models are all R1rho models with fitted R1. - # Define all the models tested in the analysis. - self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1, MODEL_DPL94_FIT_R1, MODEL_TP02_FIT_R1, MODEL_TAP03_FIT_R1, MODEL_MP05_FIT_R1, MODEL_NS_R1RHO_2SITE_FIT_R1] - - # Define which current model is selected - model = MODEL_MP05_FIT_R1 - model_nest = MODEL_TAP03_FIT_R1 + ## Test MODEL_MP05 model request, when models are all R1rho models with fitted R1. + # Define all the models tested in the analysis. + self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_R1RHO_2SITE] + + # Define which current model is selected + model = MODEL_MP05 + model_nest = MODEL_TAP03 print("self.models is:", self_models) print("Current model to analyse is:", model) @@ -356,12 +356,12 @@ def test_nesting_model_r1rho_2(self): """Unit test of function nesting_model, which determine which model to nest from, testing for R1rho experiments.""" - ## Test MODEL_TP02_FIT_R1 model request, when models are all R1rho models with fitted R1, and MODEL_NS_R1RHO_2SITE_FIT_R1 was fitted first. - # Define all the models tested in the analysis. - self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1, MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1, MODEL_NS_R1RHO_2SITE_FIT_R1, MODEL_TP02_FIT_R1] - - # Define which current model is selected - model = MODEL_TP02_FIT_R1 + ## Test MODEL_TP02 model request, when models are all R1rho models with fitted R1, and MODEL_NS_R1RHO_2SITE was fitted first. + # Define all the models tested in the analysis. + self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_NS_R1RHO_2SITE, MODEL_TP02] + + # Define which current model is selected + model = MODEL_TP02 model_nest = None print("self.models is:", self_models) @@ -375,12 +375,12 @@ def test_nesting_model_r1rho_3(self): """Unit test of function nesting_model, which determine which model to nest from, testing for R1rho experiments.""" - ## Test MODEL_DPL94_FIT_R1 model request, when models are all R1rho models with fitted R1, and MODEL_NS_R1RHO_2SITE_FIT_R1 was fitted first. - # Define all the models tested in the analysis. - self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1, MODEL_NS_R1RHO_2SITE_FIT_R1, MODEL_DPL94_FIT_R1] - - # Define which current model is selected - model = MODEL_DPL94_FIT_R1 + ## Test MODEL_DPL94 model request, when models are all R1rho models with fitted R1, and MODEL_NS_R1RHO_2SITE was fitted first. + # Define all the models tested in the analysis. + self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_NS_R1RHO_2SITE, MODEL_DPL94] + + # Define which current model is selected + model = MODEL_DPL94 model_nest = None print("self.models is:", self_models) @@ -394,12 +394,12 @@ def test_nesting_model_r1rho_4(self): """Unit test of function nesting_model, which determine which model to nest from, testing for R1rho experiments.""" - ## Test MODEL_TP02_FIT_R1 model request, when model are all R1rho models with fitted R1, and MODEL_DPL94_FIT_R1 was fitted first. - # Define all the models tested in the analysis. - self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1, MODEL_DPL94_FIT_R1, MODEL_TP02_FIT_R1] - - # Define which current model is selected - model = MODEL_TP02_FIT_R1 + ## Test MODEL_TP02 model request, when model are all R1rho models with fitted R1, and MODEL_DPL94 was fitted first. + # Define all the models tested in the analysis. + self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_DPL94, MODEL_TP02] + + # Define which current model is selected + model = MODEL_TP02 model_nest = None print("self.models is:", self_models) @@ -509,8 +509,8 @@ """Unit test of function nesting_param, which determine how model parameters are converted for nesting.""" # Define parameters - model_params = MODEL_PARAMS_TAP03_FIT_R1 - nested_model_params = MODEL_PARAMS_MP05_FIT_R1 + model_params = MODEL_PARAMS_TAP03 + nested_model_params = MODEL_PARAMS_MP05 # Get the dictionary of parameter conversion. par_dic = nesting_param(model_params=model_params, nested_model_params=nested_model_params) @@ -670,8 +670,8 @@ ## Test sort of models, when models are all R1rho models with fitted R1. # Define all the models tested in the analysis. - self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1, MODEL_DPL94_FIT_R1, MODEL_TP02_FIT_R1, MODEL_TAP03_FIT_R1, MODEL_MP05_FIT_R1, MODEL_NS_R1RHO_2SITE_FIT_R1] - expected_result = [MODEL_R2EFF, MODEL_NOREX_R1RHO_FIT_R1, MODEL_MP05_FIT_R1, MODEL_TAP03_FIT_R1, MODEL_TP02_FIT_R1, MODEL_DPL94_FIT_R1, MODEL_NS_R1RHO_2SITE_FIT_R1] + self_models = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_DPL94, MODEL_TP02, MODEL_TAP03, MODEL_MP05, MODEL_NS_R1RHO_2SITE] + expected_result = [MODEL_R2EFF, MODEL_NOREX_R1RHO, MODEL_MP05, MODEL_TAP03, MODEL_TP02, MODEL_DPL94, MODEL_NS_R1RHO_2SITE] # Test the return. self.assertEqual(sort_models(models=self_models), expected_result)