Author: bugman
Date: Thu Sep 4 10:48:34 2014
New Revision: 25616
URL: http://svn.gna.org/viewcvs/relax?rev=25616&view=rev
Log:
Merged revisions 25600-25615 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/trunk
........
r25600 | bugman | 2014-09-03 19:42:14 +0200 (Wed, 03 Sep 2014) | 7 lines
Backported the relax 3.3.0 CHANGES file changes to trunk.
The commands used were:
svn merge -r25575:r25576 svn+ssh://bugman@xxxxxxxxxxx/svn/relax/tags/3.3.0 .
svn merge -r25579:r25599 svn+ssh://bugman@xxxxxxxxxxx/svn/relax/tags/3.3.0 .
........
r25601 | bugman | 2014-09-03 20:19:01 +0200 (Wed, 03 Sep 2014) | 3 lines
Simplified the Release_Checklist document.
........
r25602 | tlinnet | 2014-09-03 22:50:23 +0200 (Wed, 03 Sep 2014) | 3 lines
Added dependency check for the NMRPipe showApod program.
This program can be really usefull, if processing a large amount of data,
and quickly needs to asses the RMSD of the spectrum.
........
r25603 | tlinnet | 2014-09-03 22:50:33 +0200 (Wed, 03 Sep 2014) | 1 line
To the lib function of spectrum.nmrpipe, added function to call the NMRPipe
program showApod, to get the output from the program.
........
r25604 | tlinnet | 2014-09-03 22:50:35 +0200 (Wed, 03 Sep 2014) | 1 line
Added systemtest Relax_disp.test_show_apod_extract to call the showApod
from NMRPipe.
........
r25605 | tlinnet | 2014-09-03 22:50:37 +0200 (Wed, 03 Sep 2014) | 1 line
Added function to extract the 'Noise Std Dev' from NMRPipe showApod.
........
r25606 | tlinnet | 2014-09-03 22:50:39 +0200 (Wed, 03 Sep 2014) | 1 line
Added systemtest to check the extraction of 'Noise Std Dev' from showApod
in NMRPipe suite.
........
r25607 | tlinnet | 2014-09-03 22:50:41 +0200 (Wed, 03 Sep 2014) | 1 line
Added function to write 'Noise Std Dev' from showApod to file, and fix
documentation.
........
r25608 | tlinnet | 2014-09-03 22:50:44 +0200 (Wed, 03 Sep 2014) | 3 lines
Systemtest added for checking the writing of 'Noise Std Dev' from showApod
to file.
task #7826(https://gna.org/task/index.php?7826): Write an python class for
the repeated analysis of dispersion data.
........
r25609 | tlinnet | 2014-09-03 22:50:46 +0200 (Wed, 03 Sep 2014) | 1 line
Added function to lib.io to sort a list of filenames into
human-understandable alphanumeric order.
........
r25610 | tlinnet | 2014-09-03 22:50:48 +0200 (Wed, 03 Sep 2014) | 1 line
Added function to search a dir for NMRPipe fourier transformed files, call
showApod on them, extract RMSD and write to file.
........
r25611 | tlinnet | 2014-09-03 22:50:50 +0200 (Wed, 03 Sep 2014) | 1 line
Added systemtest to search a dir for NMRPipe .ft2 files, extract noise, and
write to file.
........
r25612 | tlinnet | 2014-09-03 22:50:52 +0200 (Wed, 03 Sep 2014) | 3 lines
Added initial start for protocol for repeated analysis of dispersion data.
task #7826(https://gna.org/task/index.php?7826): Write an python class for
the repeated analysis of dispersion data.
........
r25613 | tlinnet | 2014-09-03 22:50:53 +0200 (Wed, 03 Sep 2014) | 3 lines
Added initial systemtest for the protocol for repeated analysis of
dispersion data.
task #7826(https://gna.org/task/index.php?7826): Write an python class for
the repeated analysis of dispersion data.
........
r25614 | tlinnet | 2014-09-03 22:50:57 +0200 (Wed, 03 Sep 2014) | 3 lines
Added initial dataset for the repeated analysis of CPMG data.
task #7826(https://gna.org/task/index.php?7826): Write an python class for
the repeated analysis of dispersion data.
........
r25615 | bugman | 2014-09-04 09:53:45 +0200 (Thu, 04 Sep 2014) | 5 lines
Created a compat_profiling module for maintaining compatibility for the
dispersion model profiling.
This will be used to provide compatibility between all relax versions into
the future.
........
Added:
branches/frame_order_cleanup/auto_analyses/relax_disp_repeat_cpmg.py
- copied unchanged from r25615,
trunk/auto_analyses/relax_disp_repeat_cpmg.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/compat_profiling.py
- copied unchanged from r25615,
trunk/test_suite/shared_data/dispersion/profiling/compat_profiling.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/repeated_analysis/
- copied from r25615,
trunk/test_suite/shared_data/dispersion/repeated_analysis/
Modified:
branches/frame_order_cleanup/ (props changed)
branches/frame_order_cleanup/auto_analyses/__init__.py
branches/frame_order_cleanup/dep_check.py
branches/frame_order_cleanup/docs/CHANGES
branches/frame_order_cleanup/docs/Release_Checklist
branches/frame_order_cleanup/lib/io.py
branches/frame_order_cleanup/lib/spectrum/nmrpipe.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_b14.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_b14_full.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_cr72.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_cr72_full.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_dpl94.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_it99.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_lm63.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_lm63_3site.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_m61.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_mmq_cr72.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_mp05.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_norex.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_3D.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_3D_full.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_expanded.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_star.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_star_full.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_mmq_2site.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_mmq_3site.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_mmq_3site_linear.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_2site.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_3site.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_3site_linear.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_tap03.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_tp02.py
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_tsmfk01.py
branches/frame_order_cleanup/test_suite/system_tests/relax_disp.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/frame_order_cleanup/auto_analyses/__init__.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/auto_analyses/__init__.py?rev=25616&r1=25615&r2=25616&view=diff
Modified: branches/frame_order_cleanup/dep_check.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/dep_check.py?rev=25616&r1=25615&r2=25616&view=diff
Modified: branches/frame_order_cleanup/docs/CHANGES
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/docs/CHANGES?rev=25616&r1=25615&r2=25616&view=diff
Modified: branches/frame_order_cleanup/docs/Release_Checklist
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/docs/Release_Checklist?rev=25616&r1=25615&r2=25616&view=diff
Modified: branches/frame_order_cleanup/lib/io.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/lib/io.py?rev=25616&r1=25615&r2=25616&view=diff
Modified: branches/frame_order_cleanup/lib/spectrum/nmrpipe.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/lib/spectrum/nmrpipe.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_b14.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_b14.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_b14_full.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_b14_full.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_cr72.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_cr72.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_cr72_full.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_cr72_full.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_dpl94.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_dpl94.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_it99.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_it99.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_lm63.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_lm63.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_lm63_3site.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_lm63_3site.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_m61.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_m61.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_mmq_cr72.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_mmq_cr72.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_mp05.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_mp05.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_norex.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_norex.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_3D.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_3D.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_3D_full.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_3D_full.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_expanded.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_expanded.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_star.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_star.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_star_full.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_cpmg_2site_star_full.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_mmq_2site.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_mmq_2site.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_mmq_3site.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_mmq_3site.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_mmq_3site_linear.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_mmq_3site_linear.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_2site.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_2site.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_3site.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_3site.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_3site_linear.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_ns_r1rho_3site_linear.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_tap03.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_tap03.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_tp02.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_tp02.py?rev=25616&r1=25615&r2=25616&view=diff
Modified:
branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_tsmfk01.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/dispersion/profiling/profiling_tsmfk01.py?rev=25616&r1=25615&r2=25616&view=diff
Modified: branches/frame_order_cleanup/test_suite/system_tests/relax_disp.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/system_tests/relax_disp.py?rev=25616&r1=25615&r2=25616&view=diff
r25616 - in /branches/frame_order_cleanup: ./ auto_analyses/ docs/ lib/ lib/spectrum/ test_suite/shared_data/dispersion/prof...