mailr25621 - /trunk/test_suite/shared_data/dispersion/profiling/profiling_it99.py


Others Months | Index by Date | Thread Index
>>   [Date Prev] [Date Next] [Thread Prev] [Thread Next]

Header


Content

Posted by edward on September 04, 2014 - 14:49:
Author: bugman
Date: Thu Sep  4 14:49:54 2014
New Revision: 25621

URL: http://svn.gna.org/viewcvs/relax?rev=25621&view=rev
Log:
The IT99 dispersion model profiling script can now handle the clustering bug.

For relax versions <= 3.2.2, the clustering is turned off as there was a bug 
in the IT99 model
target function.  The script will print out a warning when this occurs.


Modified:
    trunk/test_suite/shared_data/dispersion/profiling/profiling_it99.py

Modified: trunk/test_suite/shared_data/dispersion/profiling/profiling_it99.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/dispersion/profiling/profiling_it99.py?rev=25621&r1=25620&r2=25621&view=diff
==============================================================================
--- trunk/test_suite/shared_data/dispersion/profiling/profiling_it99.py 
(original)
+++ trunk/test_suite/shared_data/dispersion/profiling/profiling_it99.py Thu 
Sep  4 14:49:54 2014
@@ -23,16 +23,20 @@
 
###############################################################################
 
 # relax module imports.
-from base import cluster, main, NUM_SPINS_CLUSTER, NUM_SPINS_SINGLE, single, 
Profile
+from base import cluster, main, NUM_SPINS_CLUSTER, NUM_SPINS_SINGLE, single, 
Profile, version_comparison
 from specific_analyses.relax_disp.variables import EXP_TYPE_CPMG_SQ, 
MODEL_IT99
+from version import version
 
 
 # Setup.
 SINGLE = Profile(exp_type=[EXP_TYPE_CPMG_SQ], num_spins=NUM_SPINS_SINGLE, 
model=MODEL_IT99, r2=5.0, dw=3.0, pA=0.9, tex=1/1000.0, spins_params=['r2', 
'dw', 'pA', 'tex'])
-CLUSTER = Profile(exp_type=[EXP_TYPE_CPMG_SQ], num_spins=NUM_SPINS_CLUSTER, 
model=MODEL_IT99, r2=5.0, dw=3.0, pA=0.9, tex=1/1000.0, spins_params=['r2', 
'dw', 'pA', 'tex'])
+num_spins = NUM_SPINS_CLUSTER
+if version_comparison(version, '3.2.2') != 1:
+    num_spins = NUM_SPINS_SINGLE
+    print("WARNING: Cluster of only 1 spin analysis, since v. 3.2.2 had a 
bug with clustering analysis.")
+CLUSTER = Profile(exp_type=[EXP_TYPE_CPMG_SQ], num_spins=num_spins, 
model=MODEL_IT99, r2=5.0, dw=3.0, pA=0.9, tex=1/1000.0, spins_params=['r2', 
'dw', 'pA', 'tex'])
 
 
 # Execute main function.
 if __name__ == "__main__":
     main()
-




Related Messages


Powered by MHonArc, Updated Thu Sep 04 15:00:02 2014