Author: bugman
Date: Thu Sep 11 17:17:05 2014
New Revision: 25745
URL: http://svn.gna.org/viewcvs/relax?rev=25745&view=rev
Log:
Visualisation files for all of the pseudo-ellipse permutations by
frame_order.permute_axes.
This includes the x <= z <= y and z <= x <= y conditions (the previous files
were for x <= y <= z).
In all permutation combinations, optimisation has been performed to
demonstrate that these are all
local minima. These all approximate the rotor when using the CaM frame order
rotor model synthetic
data.
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_A_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_A_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_B_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_B_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_A_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_A_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_B_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_B_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/pseudo-ellipse.log
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/pseudo-ellipse.py
- copied, changed from r25741,
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pseudo-ellipse.py
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/pymol_display.py
- copied unchanged from r25741,
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pymol_display.py
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_A_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_A_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_B_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_B_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_A_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_A_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_B_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_B_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/pseudo-ellipse.log
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/pseudo-ellipse.py
- copied unchanged from r25741,
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pseudo-ellipse.py
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/pymol_display.py
- copied unchanged from r25741,
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pymol_display.py
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_orig_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_orig_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_orig_perm_A_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_orig_perm_A_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_orig_perm_B_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_orig_perm_B_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_perm_A_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_perm_A_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_perm_B_A.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_perm_B_B.pdb.gz
(with props)
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/pseudo-ellipse.log
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/pseudo-ellipse.py
- copied, changed from r25741,
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pseudo-ellipse.py
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/pymol_display.py
- copied unchanged from r25741,
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pymol_display.py
[This mail would be too long, it was shortened to contain the URLs only.]
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_A_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_A_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_A_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_A_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_B_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_B_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_B_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_orig_perm_B_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_A_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_A_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_A_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_A_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_B_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_B_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_B_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/fo_perm_B_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/pseudo-ellipse.log
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/pseudo-ellipse.log?rev=25745&view=auto
Copied:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/pseudo-ellipse.py
(from r25741,
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pseudo-ellipse.py)
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/pseudo-ellipse.py?p2=branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_z_le_y/pseudo-ellipse.py&p1=branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pseudo-ellipse.py&r1=25741&r2=25745&rev=25745&view=diff
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_A_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_A_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_A_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_A_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_B_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_B_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_B_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_orig_perm_B_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_A_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_A_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_A_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_A_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_B_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_B_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_B_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/fo_perm_B_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/pseudo-ellipse.log
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y/pseudo-ellipse.log?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_A.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_A.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_B.pdb.gz
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_B.pdb.gz?rev=25745&view=auto
Added:
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_z_le_x_le_y_alt/fo_orig_A.pdb.gz
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r25745 - in /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor: perm_pseudo_ellipse_x_le_z_le_y/ per...