r25747 - /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/r25747 - /branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/Author: bugman Date: Thu Sep 11 19:19:18 2014 New Revision: 25747 URL: http://svn.gna.org/viewcvs/relax?rev=25747&view=rev Log: Created set of files showing the axis permutation problem for the isotopic cone frame order model. This shows that there are two minima. However one has a chi-squared value of ~1, and the other a value of ~150. Nevertheless, the optimisation could be trapped in the non-global minimum so the frame_order.permute_axes user function should be used for the isotopic cones as well, just in case. Added: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/ - copied from r25744, branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/ branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/iso_cone.log branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/iso_cone.py - copied, changed from r25744, branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pseudo-ellipse.py Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_A.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_B.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_A.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_B.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_perm_A_A.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_perm_A_B.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_perm_B_A.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_perm_B_B.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_perm_A_A.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_perm_A_B.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_perm_B_A.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_perm_B_B.pdb.gz branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/pseudo-ellipse.log branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/pseudo-ellipse.py [This mail would be too long, it was shortened to contain the URLs only.] Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_A.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_A.pdb.gz?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_B.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_B.pdb.gz?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_A.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_orig_A.pdb.gz?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_B.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_orig_B.pdb.gz?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_perm_A_A.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_orig_perm_A_A.pdb.gz?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_perm_A_B.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_orig_perm_A_B.pdb.gz?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_perm_B_A.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_orig_perm_B_A.pdb.gz?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_orig_perm_B_B.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_orig_perm_B_B.pdb.gz?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_perm_A_A.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_perm_A_A.pdb.gz?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_perm_A_B.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_perm_A_B.pdb.gz?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_perm_B_A.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_perm_B_A.pdb.gz?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/fo_perm_B_B.pdb.gz URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/fo_perm_B_B.pdb.gz?rev=25744&view=auto Added: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/iso_cone.log URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/iso_cone.log?rev=25747&view=auto Copied: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/iso_cone.py (from r25744, branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pseudo-ellipse.py) URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/iso_cone.py?p2=branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/iso_cone.py&p1=branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pseudo-ellipse.py&r1=25744&r2=25747&rev=25747&view=diff Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/pseudo-ellipse.log URL: http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_pseudo_ellipse_x_le_y_le_z/pseudo-ellipse.log?rev=25744&view=auto Removed: branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/rotor/perm_iso_cone_xy_le_z/pseudo-ellipse.py URL: 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