Author: bugman
Date: Fri Sep 12 11:28:40 2014
New Revision: 25778
URL: http://svn.gna.org/viewcvs/relax?rev=25778&view=rev
Log:
Merged revisions 25748,25755-25759,25770-25774 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/trunk
........
r25748 | bugman | 2014-09-11 19:29:30 +0200 (Thu, 11 Sep 2014) | 3 lines
Added the Gimp XCF file for the logo of the relax wiki
(http://wiki.nmr-relax.com).
........
r25755 | tlinnet | 2014-09-11 21:31:38 +0200 (Thu, 11 Sep 2014) | 3 lines
Added systemtest Relax_fit.test_curve_fitting_height_estimate_error() for
the manual and automated analysis of exponential fit.
This is to prepare for new methods in the auto analysis protocol.
........
r25756 | tlinnet | 2014-09-11 21:31:43 +0200 (Thu, 11 Sep 2014) | 3 lines
In the auto analysis of exponential fitting, changed the minimisation
method from simplex to newton, to speed-up the fitting.
This is for master Monte-Carlo simulations.
........
r25757 | tlinnet | 2014-09-11 21:31:45 +0200 (Thu, 11 Sep 2014) | 4 lines
In the systemtest Relax_fit.test_curve_fitting_height_estimate_error(),
moved the auto-detection of replicated spectra
into the manual method.
This is to prepare for auto-mated detection of replicates.
........
r25758 | tlinnet | 2014-09-11 21:31:46 +0200 (Thu, 11 Sep 2014) | 3 lines
Implemented a method to automatically find dublicates of spectrum in
exponential fit.
This is to ease the user intervention for error analysis, if this has been
forgotten.
........
r25759 | tlinnet | 2014-09-11 21:31:48 +0200 (Thu, 11 Sep 2014) | 1 line
Implemented the writing out of a "grace2images.py" script file, when
performing auto analysis of exponential fits.
........
r25770 | bugman | 2014-09-12 10:45:48 +0200 (Fri, 12 Sep 2014) | 6 lines
Created the Structure.test_delete_model system test.
This is in preparation for extending the structure.delete user function to
be able to delete
individual structural models. The test will only pass once this
functionality is in place.
........
r25771 | bugman | 2014-09-12 10:57:45 +0200 (Fri, 12 Sep 2014) | 8 lines
Expanded the wiki instructions in the release checklist document.
This includes a number of steps for significantly improving the release
notes: External links to
the Gna! trackers with full descriptions, external links to the HTML user
manual for all user
functions, internal links to release notes of other relax versions,
internal links to wiki pages for
all models from all theories, and HTML formatting of all
symbols/parameters/etc.
........
r25772 | bugman | 2014-09-12 10:58:26 +0200 (Fri, 12 Sep 2014) | 5 lines
Introduction of the model argument to the structure.delete user function.
This argument is passed all the way into the internal structural object,
but is not used yet.
........
r25773 | bugman | 2014-09-12 11:22:42 +0200 (Fri, 12 Sep 2014) | 8 lines
The model argument in the structure.delete user function is now operational.
In the internal object, it has two functions. When the atom_id argument is
none, then new
ModelList.delete_model() function is being called to remove the entire
model from the list of
structural models. When the atom_id argument is supplied, then only the
corresponding atoms in the
given model will be deleted.
........
r25774 | bugman | 2014-09-12 11:25:02 +0200 (Fri, 12 Sep 2014) | 5 lines
Expanded the checking in the Structure.test_delete_model system test.
Now a number of structural model loading and deletion scenarios are tested.
........
Added:
branches/frame_order_cleanup/graphics/ulysses_wiki.xcf
- copied unchanged from r25774, trunk/graphics/ulysses_wiki.xcf
Modified:
branches/frame_order_cleanup/ (props changed)
branches/frame_order_cleanup/auto_analyses/relax_fit.py
branches/frame_order_cleanup/docs/devel/Release_Checklist
branches/frame_order_cleanup/lib/structure/internal/models.py
branches/frame_order_cleanup/lib/structure/internal/object.py
branches/frame_order_cleanup/pipe_control/structure/main.py
branches/frame_order_cleanup/test_suite/system_tests/relax_fit.py
branches/frame_order_cleanup/test_suite/system_tests/structure.py
branches/frame_order_cleanup/user_functions/structure.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/frame_order_cleanup/auto_analyses/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/auto_analyses/relax_fit.py?rev=25778&r1=25777&r2=25778&view=diff
Modified: branches/frame_order_cleanup/docs/devel/Release_Checklist
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/docs/devel/Release_Checklist?rev=25778&r1=25777&r2=25778&view=diff
Modified: branches/frame_order_cleanup/lib/structure/internal/models.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/lib/structure/internal/models.py?rev=25778&r1=25777&r2=25778&view=diff
Modified: branches/frame_order_cleanup/lib/structure/internal/object.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/lib/structure/internal/object.py?rev=25778&r1=25777&r2=25778&view=diff
Modified: branches/frame_order_cleanup/pipe_control/structure/main.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/pipe_control/structure/main.py?rev=25778&r1=25777&r2=25778&view=diff
Modified: branches/frame_order_cleanup/test_suite/system_tests/relax_fit.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/system_tests/relax_fit.py?rev=25778&r1=25777&r2=25778&view=diff
Modified: branches/frame_order_cleanup/test_suite/system_tests/structure.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/system_tests/structure.py?rev=25778&r1=25777&r2=25778&view=diff
Modified: branches/frame_order_cleanup/user_functions/structure.py
URL:
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/user_functions/structure.py?rev=25778&r1=25777&r2=25778&view=diff
r25778 - in /branches/frame_order_cleanup: ./ auto_analyses/ docs/devel/ graphics/ lib/structure/internal/ pipe_control/stru...