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Posted by edward on November 10, 2014 - 14:27:
Author: bugman
Date: Mon Nov 10 14:27:50 2014
New Revision: 26479

URL: http://svn.gna.org/viewcvs/relax?rev=26479&view=rev
Log:
Redesign of the free rotor isotropic cone frame order model - the order 
parameter has been replaced.


From the frame order matrix element graphs in 
test_suite/shared_data/frame_order/sim_vs_pred_matrix,

specifically Sijkl_iso_cone_free_rotor_in_frame_theta_x_calc.agr,
Sijkl_iso_cone_free_rotor_axis2_1_3_theta_x_calc.agr, and
Sijkl_iso_cone_free_rotor_out_of_frame_theta_x_calc.agr, it is clear that the 
symmetry of the order
parameter after 120 degrees causes the 2nd degree frame order matrix to be 
incorrectly estimated.
Therefore the S1 order parameter has been replaced with the original cone 
opening angle cone_theta.

All parts of relax have been updated for this large conversion.


Modified:
    branches/frame_order_cleanup/auto_analyses/frame_order.py
    branches/frame_order_cleanup/lib/frame_order/iso_cone_free_rotor.py
    branches/frame_order_cleanup/specific_analyses/frame_order/api.py
    branches/frame_order_cleanup/specific_analyses/frame_order/geometric.py
    branches/frame_order_cleanup/specific_analyses/frame_order/optimisation.py
    
branches/frame_order_cleanup/specific_analyses/frame_order/parameter_object.py
    branches/frame_order_cleanup/specific_analyses/frame_order/parameters.py
    branches/frame_order_cleanup/target_functions/frame_order.py
    
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/iso_cone_free_rotor/frame_order.py
    
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/iso_cone_free_rotor2/frame_order.py
    
branches/frame_order_cleanup/test_suite/shared_data/frame_order/displacements/rigid_test.py
    branches/frame_order_cleanup/test_suite/system_tests/frame_order.py
    
branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/cam/base_script.py
    
branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/cam/iso_cone_free_rotor.py
    
branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/cam/iso_cone_free_rotor2.py
    
branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/rigid_test.py

[This mail would be too long, it was shortened to contain the URLs only.]

Modified: branches/frame_order_cleanup/auto_analyses/frame_order.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/auto_analyses/frame_order.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: branches/frame_order_cleanup/lib/frame_order/iso_cone_free_rotor.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/lib/frame_order/iso_cone_free_rotor.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: branches/frame_order_cleanup/specific_analyses/frame_order/api.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/specific_analyses/frame_order/api.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: 
branches/frame_order_cleanup/specific_analyses/frame_order/geometric.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/specific_analyses/frame_order/geometric.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: 
branches/frame_order_cleanup/specific_analyses/frame_order/optimisation.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/specific_analyses/frame_order/optimisation.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: 
branches/frame_order_cleanup/specific_analyses/frame_order/parameter_object.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/specific_analyses/frame_order/parameter_object.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: 
branches/frame_order_cleanup/specific_analyses/frame_order/parameters.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/specific_analyses/frame_order/parameters.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: branches/frame_order_cleanup/target_functions/frame_order.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/target_functions/frame_order.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: 
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/iso_cone_free_rotor/frame_order.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/iso_cone_free_rotor/frame_order.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: 
branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/iso_cone_free_rotor2/frame_order.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/cam/iso_cone_free_rotor2/frame_order.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: 
branches/frame_order_cleanup/test_suite/shared_data/frame_order/displacements/rigid_test.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/shared_data/frame_order/displacements/rigid_test.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: branches/frame_order_cleanup/test_suite/system_tests/frame_order.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/system_tests/frame_order.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: 
branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/cam/base_script.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/cam/base_script.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: 
branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/cam/iso_cone_free_rotor.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/cam/iso_cone_free_rotor.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: 
branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/cam/iso_cone_free_rotor2.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/cam/iso_cone_free_rotor2.py?rev=26479&r1=26478&r2=26479&view=diff

Modified: 
branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/rigid_test.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/frame_order_cleanup/test_suite/system_tests/scripts/frame_order/rigid_test.py?rev=26479&r1=26478&r2=26479&view=diff

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