r26815 - /branches/nmrglue/test_suite/system_tests/nmrglue.py -- November 29, 2014 - 00:04

Author: tlinnet
Date: Sat Nov 29 00:04:35 2014
New Revision: 26815

URL: http://svn.gna.org/viewcvs/relax?rev=26815&view=rev
Log:
Added systemtest Nmrglue.test_get_file_list to test getting a list of 
basenames and fileroots.

Task #7873 (https://gna.org/task/index.php?7873): Write wrapper function to 
nmrglue, to read .ft2 files and process them.
Homepage: http://www.nmrglue.com/
Link to nmrglue discussion: 
https://groups.google.com/forum/#!forum/nmrglue-discuss
The code is develop at Github: https://github.com/jjhelmus/nmrglue/
Google code: https://code.google.com/p/nmrglue/
Documentation: http://nmrglue.readthedocs.org/en/latest/index.html

Modified:
    branches/nmrglue/test_suite/system_tests/nmrglue.py

Modified: branches/nmrglue/test_suite/system_tests/nmrglue.py
URL: 
http://svn.gna.org/viewcvs/relax/branches/nmrglue/test_suite/system_tests/nmrglue.py?rev=26815&r1=26814&r2=26815&view=diff
==============================================================================
--- branches/nmrglue/test_suite/system_tests/nmrglue.py (original)
+++ branches/nmrglue/test_suite/system_tests/nmrglue.py Sat Nov 29 00:04:35 
2014
@@ -26,7 +26,7 @@
 
 # relax module imports.
 from data_store import Relax_data_store; ds = Relax_data_store()
-from lib.io import file_root
+from lib.io import file_root, get_file_list
 from pipe_control.nmrglue import plot_contour, plot_hist
 from status import Status; status = Status()
 from test_suite.system_tests.base_classes import SystemTestCase
@@ -48,6 +48,23 @@
 
         # Create path to nmrglue test data.
         ds.ng_test = status.install_path +sep+ 'extern' +sep+ 'nmrglue' 
+sep+ 'nmrglue_0_4' +sep+ 'tests' +sep+ 'pipe_proc_tests'
+
+
+    def test_get_file_list(self):
+        """Test getting a file list with glob."""
+
+        # Define base path to files.
+        base_path = status.install_path + 
sep+'test_suite'+sep+'shared_data'+sep+'dispersion'+sep+'repeated_analysis'+sep+'SOD1'
+
+        # Define folder to all ft files.
+        ft2_folder_1 = base_path +sep+ 'cpmg_disp_sod1d90a_060518' +sep+ 
'cpmg_disp_sod1d90a_060518_normal.fid' +sep+ 'ft2_data'
+
+        # Get the file list matching a glob pattern.
+        ft2_glob_pat = '128_*_FT.ft2'
+        basename_list, file_root_list = 
get_file_list(glob_pattern=ft2_glob_pat, dir=ft2_folder_1)
+
+        self.assertEqual(basename_list, ['128_0_FT.ft2', '128_1_FT.ft2'])
+        self.assertEqual(file_root_list, ['128_0_FT', '128_1_FT'])
 
 
     def test_nmrglue_read(self):