r27277 - in /trunk/test_suite: shared_data/structures/ system_tests/ system_tests/scripts/n_state_model/ -- January 22, 2015 - 17:30

Author: bugman
Date: Thu Jan 22 17:30:20 2015
New Revision: 27277

URL: http://svn.gna.org/viewcvs/relax?rev=27277&view=rev
Log:
Created the Structure.test_align_CaM_BLOSUM62 system test.

This will be used for expanding the functionality of the structure.align user 
function to perform
true sequence alignment via the new lib.sequence_alignment package.  The test 
aligns 3 calmodulin
(CaM) structures from different organisms, hence the sequence numbering is 
different and the current
structure.align user function design fails.  The structure.align user 
function has been expanded in
the test to include a number of arguments for advanced sequence alignment.


Added:
    trunk/test_suite/shared_data/structures/1J7O.pdb
    trunk/test_suite/shared_data/structures/1J7P.pdb
    trunk/test_suite/shared_data/structures/1OSA.pdb
    trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py
Modified:
    trunk/test_suite/system_tests/structure.py

[This mail would be too long, it was shortened to contain the URLs only.]

Added: trunk/test_suite/shared_data/structures/1J7O.pdb
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/structures/1J7O.pdb?rev=27277&view=auto

Added: trunk/test_suite/shared_data/structures/1J7P.pdb
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/structures/1J7P.pdb?rev=27277&view=auto

Added: trunk/test_suite/shared_data/structures/1OSA.pdb
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/shared_data/structures/1OSA.pdb?rev=27277&view=auto

Added: trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py?rev=27277&view=auto

Modified: trunk/test_suite/system_tests/structure.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/structure.py?rev=27277&r1=27276&r2=27277&view=diff