r27284 - /trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py -- January 23, 2015 - 09:46

Author: bugman
Date: Fri Jan 23 09:46:40 2015
New Revision: 27284

URL: http://svn.gna.org/viewcvs/relax?rev=27284&view=rev
Log:
Removed the 'algorithm' argument from the Structure.test_align_CaM_BLOSUM62 
system test script.

This is for the structure.align user function.  The argument has not been 
implemented to save room
in the GUI, and as 'NW70' is currently the only choice.


Modified:
    trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py

Modified: 
trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py?rev=27284&r1=27283&r2=27284&view=diff
==============================================================================
--- trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py    
  (original)
+++ trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py    
  Fri Jan 23 09:46:40 2015
@@ -17,7 +17,7 @@
     structure.read_pdb('%s.pdb' % code, dir=status.install_path + 
sep+'test_suite'+sep+'shared_data'+sep+'structures')
 
 # Backbone heavy atom align all structures.
-structure.align(pipes=codes, atom_id='@N,C,CA,O', method='fit to first', 
algorithm='NW70', matrix='BLOSUM62', gap_open_penalty=1.0, 
gap_extend_penalty=1.0, end_gap_open_penalty=0.0, end_gap_extend_penalty=0.0)
+structure.align(pipes=codes, atom_id='@N,C,CA,O', method='fit to first', 
matrix='BLOSUM62', gap_open_penalty=1.0, gap_extend_penalty=1.0, 
end_gap_open_penalty=0.0, end_gap_extend_penalty=0.0)
 
 # Write out the result.
 structure.write_pdb('devnull', force=True)