r27314 - /trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py -- January 26, 2015 - 17:45

Author: bugman
Date: Mon Jan 26 17:45:27 2015
New Revision: 27314

URL: http://svn.gna.org/viewcvs/relax?rev=27314&view=rev
Log:
Changed the gap opening penalty to 10 in the N-state model structure_align.py 
system test script.


Modified:
    trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py

Modified: 
trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py?rev=27314&r1=27313&r2=27314&view=diff
==============================================================================
--- trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py    
  (original)
+++ trunk/test_suite/system_tests/scripts/n_state_model/structure_align.py    
  Mon Jan 26 17:45:27 2015
@@ -17,7 +17,7 @@
     structure.read_pdb('%s.pdb' % code, dir=status.install_path + 
sep+'test_suite'+sep+'shared_data'+sep+'structures')
 
 # Backbone heavy atom align all structures.
-structure.align(pipes=codes, atom_id='@N,C,CA,O', method='fit to first', 
matrix='BLOSUM62', gap_open_penalty=1.0, gap_extend_penalty=1.0, 
end_gap_open_penalty=0.0, end_gap_extend_penalty=0.0)
+structure.align(pipes=codes, atom_id='@N,C,CA,O', method='fit to first', 
matrix='BLOSUM62', gap_open_penalty=10.0, gap_extend_penalty=1.0, 
end_gap_open_penalty=0.0, end_gap_extend_penalty=0.0)
 
 # Write out the result.
 structure.write_pdb('devnull', force=True)