r27346 - /trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_align_protein.py -- January 29, 2015 - 13:25

Author: bugman
Date: Thu Jan 29 13:24:59 2015
New Revision: 27346

URL: http://svn.gna.org/viewcvs/relax?rev=27346&view=rev
Log:
Expanded the docstring of the 
Test_align_protein.test_align_multiple_from_pairwise unit test.

This is from the _lib._sequence_alignment.test_align_protein unit test module.


Modified:
    trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_align_protein.py

Modified: 
trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_align_protein.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_align_protein.py?rev=27346&r1=27345&r2=27346&view=diff
==============================================================================
--- 
trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_align_protein.py  
(original)
+++ 
trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_align_protein.py  
Thu Jan 29 13:24:59 2015
@@ -39,12 +39,36 @@
             - 'ADQLTEEQVDADGNGTIDFPEFLTMMARKM',
             - 'LTEEQMINEVDAGNGTIDFPEFLTMMAR'.
 
-        The result should be:
-
-            - '----TEEQ----VDADG-GT--------------',
-            - 'ADQLTEEQ----VDADGNGTIDFPEFLTMMARKM',
-            - '
----LTEEQMINEVDA-GNGTIDFPEFLTMMAR--'.
+        The result should be::
+
+            Pairwise protein alignment.
+            Substitution matrix:           BLOSUM62
+            Gap opening penalty:           5.0
+            Gap extend penalty:            1.0
+            
+            Input sequence 1:              TEEQVDADGGT
+            Input sequence 2:              ADQLTEEQVDADGNGTIDFPEFLTMMARKM
+            
+            Aligned sequence 1:            ----TEEQVDADG-GT--------------
+            Aligned sequence 2:            ADQLTEEQVDADGNGTIDFPEFLTMMARKM
+                                               ********* **              
+            
+            
+            Pairwise protein alignment.
+            Substitution matrix:           BLOSUM62
+            Gap opening penalty:           5.0
+            Gap extend penalty:            1.0
+            
+            Input sequence 1:              TEEQVDADGGT
+            Input sequence 2:              LTEEQMINEVDAGNGTIDFPEFLTMMAR
+            
+            Aligned sequence 1:            -TEEQ----VDADGGT------------
+            Aligned sequence 2:            LTEEQMINEVDAGNGTIDFPEFLTMMAR
+                                            ****    ***  **            
+
+            ----TEEQ----VDADG-GT--------------
+            ADQLTEEQ----VDADGNGTIDFPEFLTMMARKM
+            ---LTEEQMINEVDA-GNGTIDFPEFLTMMAR--
         """
 
         # The sequences.