r27355 - /trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_msa.py -- January 29, 2015 - 15:39

Author: bugman
Date: Thu Jan 29 15:39:38 2015
New Revision: 27355

URL: http://svn.gna.org/viewcvs/relax?rev=27355&view=rev
Log:
Fix for the Test_msa.test_central_star unit test.

This is from the _lib._sequence_alignment.test_msa unit test module.  Some of 
the real gap matrix
indices were incorrect.


Modified:
    trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_msa.py

Modified: trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_msa.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_msa.py?rev=27355&r1=27354&r2=27355&view=diff
==============================================================================
--- trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_msa.py    
(original)
+++ trunk/test_suite/unit_tests/_lib/_sequence_alignment/test_msa.py    Thu 
Jan 29 15:39:38 2015
@@ -75,9 +75,6 @@
         seq1 =     'TEEQVDADGGT'
         seq2 = 'ADQLTEEQVDADGNGTIDFPEFLTMMARKM'
         seq3 =    'LTEEQMINEVDAGNGTIDFPEFLTMMAR'
-        print(seq1)
-        print(seq2)
-        print(seq3)
 
         # Perform the alignment.
         strings, gaps = central_star([seq1, seq2, seq3], matrix='BLOSUM62', 
gap_open_penalty=5.0, gap_extend_penalty=1.0)
@@ -97,7 +94,7 @@
             real_gaps[0, i] = 1
         for i in range(8, 12):
             real_gaps[1, i] = 1
-        for i in (range(3) + [15, 33, 34]):
+        for i in (range(3) + [15, 32, 33]):
             real_gaps[2, i] = 1
         for i in range(3):
             for j in range(34):