r27360 - /trunk/test_suite/unit_tests/_lib/_structure/_internal/test_coordinates.py -- January 29, 2015 - 16:20

Author: bugman
Date: Thu Jan 29 16:20:54 2015
New Revision: 27360

URL: http://svn.gna.org/viewcvs/relax?rev=27360&view=rev
Log:
Deleted the Test_coordinates.test_common_residues unit test.

This is from the _lib._structure._internal.test_coordinates unit test module. 
 The
lib.structure.internal.coordinates.common_residues() function no longer 
exists.


Modified:
    trunk/test_suite/unit_tests/_lib/_structure/_internal/test_coordinates.py

Modified: 
trunk/test_suite/unit_tests/_lib/_structure/_internal/test_coordinates.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_lib/_structure/_internal/test_coordinates.py?rev=27360&r1=27359&r2=27360&view=diff
==============================================================================
--- trunk/test_suite/unit_tests/_lib/_structure/_internal/test_coordinates.py 
  (original)
+++ trunk/test_suite/unit_tests/_lib/_structure/_internal/test_coordinates.py 
  Thu Jan 29 16:20:54 2015
@@ -29,46 +29,3 @@
 
 class Test_coordinates(UnitTestCase):
     """Unit tests for the functions of the 
'lib.structure.internal.coordinates' module."""
-
-    def test_common_residues(self):
-        """Test the lib.structure.internal.coordinates.common_residues() 
function."""
-
-        # The gap matrices.
-        gap_matrices = [
-            array([
-                [1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 1, 
1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
-                [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 
0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
-            ], int16),
-            array([
-                [1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 
1, 1, 1, 1, 1, 1, 1, 1, 1],
-                [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 
0, 0, 0, 0, 0, 0, 0, 0, 0]
-            ], int16)
-        ]
-        seq1 =     'TEEQVDADGGT'
-        seq2 = 'ADQLTEEQVDADGNGTIDFPEFLTMMARKM'
-        seq3 =    'LTEEQMINEVDAGNGTIDFPEFLTMMAR'
-
-        # Determine the common residues.
-        skip, gapped_strings = 
coordinates.common_residues(gap_matrices=gap_matrices, 
one_letter_codes=[seq1, seq2, seq3], seq=True)
-
-        # The expected skipping matrices.
-        N = len(seq1)
-        skip_real = [
-            [0]*4 + [1]*4 + [0]*(N-8),
-            [1]*4 + [0]*N + [1]*(len(seq2)-N-4),
-            [1] + [0]*N + [1]*(len(seq3)-N-1)
-        ]
-
-        # The expected gapped strings.
-        gapped_seq1 = '----TEEQ----VDA-G-GT----------------'
-        gapped_seq2 = '----TEEQ----VDA-G-GT----------------'
-        gapped_seq3 = '----TEEQMINEVDA-G-GT----------------'
-        gapped_real = [gapped_seq1, gapped_seq2, gapped_seq3]
-
-        # Checks.
-        for i in range(3):
-            print("Sequence %i" % (i+1))
-            self.assertEqual(len(skip_real[i]), len(skip[i]))
-            for j in range(len(skip_real[i])):
-                self.assertEqual(skip_real[i][j], skip[i][j])
-            #self.assertEqual(gapped_real[i], gapped_strings[i])