r27391 - /trunk/test_suite/system_tests/structure.py -- January 30, 2015 - 14:46

Author: bugman
Date: Fri Jan 30 14:46:12 2015
New Revision: 27391

URL: http://svn.gna.org/viewcvs/relax?rev=27391&view=rev
Log:
Modified the Structure.test_sequence_alignment_molecules system test.

Changed and expanded the arguments to the yet to be implemented 
structure.sequence_alignment user
function.


Modified:
    trunk/test_suite/system_tests/structure.py

Modified: trunk/test_suite/system_tests/structure.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/structure.py?rev=27391&r1=27390&r2=27391&view=diff
==============================================================================
--- trunk/test_suite/system_tests/structure.py  (original)
+++ trunk/test_suite/system_tests/structure.py  Fri Jan 30 14:46:12 2015
@@ -4654,7 +4654,7 @@
         self.interpreter.structure.read_pdb('1J7P_1st_NH_rot.pdb', dir=path, 
set_model_num=1, set_mol_name='CaM B')
 
         # Perform the alignment.
-        self.interpreter.structure.sequence_alignment(msa_algorithm='Central 
Star', algorithm='NW70', matrix='BLOSUM62', gap_open_penalty=10.0, 
gap_extend_penalty=1.0, end_gap_open_penalty=0.5, end_gap_extend_penalty=0.1)
+        self.interpreter.structure.sequence_alignment(pipes=['mf'], 
models=[[1, 1]], molecules=[['CaM A', 'CaM B']], msa_algorithm='Central 
Star', pairwise_algorithm='NW70', matrix='BLOSUM62', gap_open_penalty=10.0, 
gap_extend_penalty=1.0, end_gap_open_penalty=0.5, end_gap_extend_penalty=0.1)
 
         # Save the relax state.
         self.tmpfile = mktemp()