r27397 - /trunk/data_store/seq_align.py -- January 30, 2015 - 17:31

Author: bugman
Date: Fri Jan 30 17:31:48 2015
New Revision: 27397

URL: http://svn.gna.org/viewcvs/relax?rev=27397&view=rev
Log:
Fixes for the sequence alignment objects for the relax data store.

The Sequence_alignments(RelaxListType) and Alignment(Element) classes were 
not being set up
correctly.  The container names and descriptions were missing.


Modified:
    trunk/data_store/seq_align.py

Modified: trunk/data_store/seq_align.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/data_store/seq_align.py?rev=27397&r1=27396&r2=27397&view=diff
==============================================================================
--- trunk/data_store/seq_align.py       (original)
+++ trunk/data_store/seq_align.py       Fri Jan 30 17:31:48 2015
@@ -30,6 +30,17 @@
 
 class Sequence_alignments(RelaxListType):
     """The structure for holding all sequence alignments."""
+
+    def __init__(self):
+        """Initialise some class variables."""
+
+        # Execute the base class __init__() method.
+        super(Sequence_alignments, self).__init__()
+
+        # Some generic initial names.
+        self.list_name = 'sequence_alignments'
+        self.list_desc = 'List of all multiple sequence alignments'
+
 
     def add(self, object_ids=None, models=None, molecules=None, 
sequences=None, strings=None, gaps=None, msa_algorithm=None, 
pairwise_algorithm=None, matrix=None, gap_open_penalty=None, 
gap_extend_penalty=None, end_gap_open_penalty=None, 
end_gap_extend_penalty=None):
         """Add a new sequence alignment.
@@ -175,6 +186,9 @@
         @type end_gap_extend_penalty:       float
         """
 
+        # Execute the base class __init__() method.
+        super(Alignment, self).__init__(name='sequence_alignment', 
desc='Multiple sequence alignment container.')
+
         # Store the values.
         self.object_ids = object_ids
         self.models = models