r27408 - /trunk/pipe_control/structure/main.py -- January 31, 2015 - 10:13

Author: bugman
Date: Sat Jan 31 10:13:27 2015
New Revision: 27408

URL: http://svn.gna.org/viewcvs/relax?rev=27408&view=rev
Log:
Fix for the structure.sequence_alignment user function.

The alignment data should be stored in ds.sequence_alignments rather than 
ds.sequence_alignment.


Modified:
    trunk/pipe_control/structure/main.py

Modified: trunk/pipe_control/structure/main.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/pipe_control/structure/main.py?rev=27408&r1=27407&r2=27408&view=diff
==============================================================================
--- trunk/pipe_control/structure/main.py        (original)
+++ trunk/pipe_control/structure/main.py        Sat Jan 31 10:13:27 2015
@@ -1199,11 +1199,11 @@
         strings, gaps = central_star(one_letter_codes, 
algorithm=pairwise_algorithm, matrix=matrix, 
gap_open_penalty=gap_open_penalty, gap_extend_penalty=gap_extend_penalty, 
end_gap_open_penalty=end_gap_open_penalty, 
end_gap_extend_penalty=end_gap_extend_penalty)
 
     # Set up the data store object.
-    if not hasattr(ds, 'sequence_alignment'):
-        ds.sequence_alignment = Sequence_alignments()
+    if not hasattr(ds, 'sequence_alignments'):
+        ds.sequence_alignments = Sequence_alignments()
 
     # Store the alignment.
-    ds.sequence_alignment.add(object_ids=object_id_list, models=model_list, 
molecules=molecule_list, sequences=one_letter_codes, strings=strings, 
gaps=gaps, msa_algorithm=msa_algorithm, 
pairwise_algorithm=pairwise_algorithm, matrix=matrix, 
gap_open_penalty=gap_open_penalty, gap_extend_penalty=gap_extend_penalty, 
end_gap_open_penalty=end_gap_open_penalty, 
end_gap_extend_penalty=end_gap_extend_penalty)
+    ds.sequence_alignments.add(object_ids=object_id_list, models=model_list, 
molecules=molecule_list, sequences=one_letter_codes, strings=strings, 
gaps=gaps, msa_algorithm=msa_algorithm, 
pairwise_algorithm=pairwise_algorithm, matrix=matrix, 
gap_open_penalty=gap_open_penalty, gap_extend_penalty=gap_extend_penalty, 
end_gap_open_penalty=end_gap_open_penalty, 
end_gap_extend_penalty=end_gap_extend_penalty)
 
 
 def set_vector(spin=None, xh_vect=None):