r27415 - /trunk/pipe_control/structure/main.py -- January 31, 2015 - 11:40

Author: bugman
Date: Sat Jan 31 11:40:22 2015
New Revision: 27415

URL: http://svn.gna.org/viewcvs/relax?rev=27415&view=rev
Log:
Updated the structure.web_of_motion user function for the changed atomic 
assembly logic.

This now uses the assemble_structural_coordinates() function of the 
pipe_control.structure.main
module to obtain the common coordinates based on pre-existing sequence 
alignments, no-alignment, or
the default of a residue number based alignment.


Modified:
    trunk/pipe_control/structure/main.py

Modified: trunk/pipe_control/structure/main.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/pipe_control/structure/main.py?rev=27415&r1=27414&r2=27415&view=diff
==============================================================================
--- trunk/pipe_control/structure/main.py        (original)
+++ trunk/pipe_control/structure/main.py        Sat Jan 31 11:40:22 2015
@@ -1609,11 +1609,8 @@
     check_pipe()
     check_structure()
 
-    # Assemble the structural objects.
-    objects, object_names, pipes = assemble_structural_objects(pipes=pipes, 
models=models, molecules=molecules)
-
-    # Assemble the atomic coordinates.
-    coord, ids, mol_names, res_names, res_nums, atom_names, elements = 
assemble_coord_array(objects=objects, object_names=object_names, 
models=models, molecules=molecules, atom_id=atom_id, seq_info_flag=True)
+    # Assemble the structural coordinates.
+    coord, ids, mol_names, res_names, res_nums, atom_names, elements = 
assemble_structural_coordinates(pipes=pipes, models=models, 
molecules=molecules, atom_id=atom_id)
 
     # Check that more than one structure is present.
     if not len(coord) > 1: