Author: bugman
Date: Fri Feb 20 11:49:46 2015
New Revision: 27693
URL: http://svn.gna.org/viewcvs/relax?rev=27693&view=rev
Log:
Merged revisions 27690-27692 via svnmerge from
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/trunk
........
r27690 | bugman | 2015-02-20 10:07:31 +0100 (Fri, 20 Feb 2015) | 7 lines
Improved the RelaxWarning for missing atom numbers in the PDB CONECT
records.
This is for the structure.read_pdb user function. Now only one warning is
given for the entire PDB
file listing all of the missing atom numbers rather than one warning per
missing atom. This can
significantly compact the warnings, removing a lot of repetition.
........
r27691 | bugman | 2015-02-20 10:23:44 +0100 (Fri, 20 Feb 2015) | 8 lines
Improved the quality of the printouts from the structure.read_pdb user
function.
This also affects the structure.read_gaussian and structure.read_xyz user
functions. The messages
about adding new molecules or merging with existing molecules has been
significantly improved. The
text with the model information is now only printed if the model number is
present in the PDB file
or has been supplied by the user.
........
r27692 | bugman | 2015-02-20 11:26:56 +0100 (Fri, 20 Feb 2015) | 10 lines
Fixes for all of the PDB documentation HTML links in the docstrings.
The PDB have shifted their documentation from
http://www.wwpdb.org/documentation/format33/v3.3.html
to http://www.wwpdb.org/documentation/file-format/format33/v3.3.html,
stupidly without redirects.
This will create dead links in the relax API documentation at
http://www.nmr-relax.com/api/3.3/, as
well as the older API documentation (http://www.nmr-relax.com/api/2.2/,
http://www.nmr-relax.com/api/3.0/, http://www.nmr-relax.com/api/3.1/,
http://www.nmr-relax.com/api/3.2/).
........
Modified:
branches/nmrglue/ (props changed)
branches/nmrglue/lib/structure/internal/molecules.py
branches/nmrglue/lib/structure/internal/object.py
branches/nmrglue/lib/structure/pdb_read.py
branches/nmrglue/lib/structure/pdb_write.py
[This mail would be too long, it was shortened to contain the URLs only.]
Modified: branches/nmrglue/lib/structure/internal/molecules.py
URL:
http://svn.gna.org/viewcvs/relax/branches/nmrglue/lib/structure/internal/molecules.py?rev=27693&r1=27692&r2=27693&view=diff
Modified: branches/nmrglue/lib/structure/internal/object.py
URL:
http://svn.gna.org/viewcvs/relax/branches/nmrglue/lib/structure/internal/object.py?rev=27693&r1=27692&r2=27693&view=diff
Modified: branches/nmrglue/lib/structure/pdb_read.py
URL:
http://svn.gna.org/viewcvs/relax/branches/nmrglue/lib/structure/pdb_read.py?rev=27693&r1=27692&r2=27693&view=diff
Modified: branches/nmrglue/lib/structure/pdb_write.py
URL:
http://svn.gna.org/viewcvs/relax/branches/nmrglue/lib/structure/pdb_write.py?rev=27693&r1=27692&r2=27693&view=diff
r27693 - in /branches/nmrglue: ./ lib/structure/ lib/structure/internal/