r27928 - in /trunk: ./ auto_analyses/ pipe_control/ test_suite/system_tests/ test_suite/system_tests/scripts/frame_order/cam/ -- October 01, 2015 - 21:19

Author: bugman
Date: Thu Oct  1 21:19:08 2015
New Revision: 27928

URL: http://svn.gna.org/viewcvs/relax?rev=27928&view=rev
Log:
Merged revisions 23632-23635 via svnmerge from 
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/branches/frame_order_cleanup

........
  r23632 | bugman | 2014-06-04 10:56:18 +0200 (Wed, 04 Jun 2014) | 8 lines
  
  Expanded the capabilities of the pymol.frame_order user function.
  
  The isotropic and pseudo-elliptic cones are now represented as they used to 
be under the
  pymol.cone_pdb user function.  To avoid code duplication, the new 
represent_cone_axis(),
  represent_cone_object() and represent_rotor_object() functions have been 
created to send the
  commands into PyMOL.
........
  r23633 | bugman | 2014-06-04 11:24:12 +0200 (Wed, 04 Jun 2014) | 7 lines
  
  Increased the precision of all of the CaM frame order system tests by 40 
times.
  
  The number of Sobol' integration points have been significantly increased 
while only increasing the
  frame order system test timings by ~10%.  This allows for checking for 
chi-squared values at the
  minima much closer to zero, and is much better for demonstrating bugs.
........
  r23634 | bugman | 2014-06-04 13:54:40 +0200 (Wed, 04 Jun 2014) | 6 lines
  
  Optimisation constraints are no longer turned off in the frame order 
auto-analysis.
  
  Constraints are now supported by all frame order models, or automatically 
turned off for those which
  do not have parameter constraints.
........
  r23635 | bugman | 2014-06-04 13:56:59 +0200 (Wed, 04 Jun 2014) | 5 lines
  
  Fix for the frame order visualisation script created by the auto-analysis.
  
  The call to pymol.frame_order is now correct for the current version of 
this user function.
........

Modified:
    trunk/   (props changed)
    trunk/auto_analyses/frame_order.py
    trunk/pipe_control/pymol_control.py
    trunk/test_suite/system_tests/frame_order.py
    trunk/test_suite/system_tests/scripts/frame_order/cam/base_script.py
    trunk/test_suite/system_tests/scripts/frame_order/cam/pseudo_ellipse.py

[This mail would be too long, it was shortened to contain the URLs only.]

Modified: trunk/auto_analyses/frame_order.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/auto_analyses/frame_order.py?rev=27928&r1=27927&r2=27928&view=diff

Modified: trunk/pipe_control/pymol_control.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/pipe_control/pymol_control.py?rev=27928&r1=27927&r2=27928&view=diff

Modified: trunk/test_suite/system_tests/frame_order.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/frame_order.py?rev=27928&r1=27927&r2=27928&view=diff

Modified: trunk/test_suite/system_tests/scripts/frame_order/cam/base_script.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/scripts/frame_order/cam/base_script.py?rev=27928&r1=27927&r2=27928&view=diff

Modified: 
trunk/test_suite/system_tests/scripts/frame_order/cam/pseudo_ellipse.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/scripts/frame_order/cam/pseudo_ellipse.py?rev=27928&r1=27927&r2=27928&view=diff