r27958 - in /trunk: ./ pipe_control/ specific_analyses/frame_order/ test_suite/system_tests/ user_functions/ -- October 02, 2015 - 15:05

Author: bugman
Date: Fri Oct  2 15:05:16 2015
New Revision: 27958

URL: http://svn.gna.org/viewcvs/relax?rev=27958&view=rev
Log:
Merged revisions 26896-26900,26908-26911 via svnmerge from 
svn+ssh://bugman@xxxxxxxxxxx/svn/relax/branches/frame_order_cleanup

........
  r26896 | bugman | 2014-12-02 16:02:05 +0100 (Tue, 02 Dec 2014) | 6 lines
  
  Created the Frame_order.test_simulate_iso_cone_xz_plane_tilt system test.
  
  This is to check the frame_order.simulate user function for the torsionless 
isotropic cone model
  with a xz-plane tilt.
........
  r26897 | bugman | 2014-12-02 16:12:07 +0100 (Tue, 02 Dec 2014) | 6 lines
  
  Created the Frame_order.test_simulate_pseudo_ellipse_free_rotor_z_axis 
system test.
  
  This is to check the frame_order.simulate user function for the free rotor 
pseudo-ellipse model
  along the z-axis.
........
  r26898 | bugman | 2014-12-02 16:16:33 +0100 (Tue, 02 Dec 2014) | 6 lines
  
  Created the Frame_order.test_simulate_pseudo_ellipse_xy_plane_tilt system 
test.
  
  This is to check the frame_order.simulate user function for the 
pseudo-ellipse model with a xz-plane
  tilt.
........
  r26899 | bugman | 2014-12-02 16:29:04 +0100 (Tue, 02 Dec 2014) | 6 lines
  
  Created the Frame_order.test_simulate_pseudo_ellipse_torsionless_z_axis 
system test.
  
  This is to check the frame_order.simulate user function for the torsionless 
pseudo-ellipse model
  along the z-axis.
........
  r26900 | bugman | 2014-12-02 16:29:57 +0100 (Tue, 02 Dec 2014) | 5 lines
  
  Fix for the Frame_order.test_simulate_pseudo_ellipse_xz_plane_tilt system 
test name.
  
  This was mislabelled as 
Frame_order.test_simulate_pseudo_ellipse_xy_plane_tilt.
........
  r26908 | bugman | 2014-12-03 09:34:46 +0100 (Wed, 03 Dec 2014) | 8 lines
  
  Redesign of the pymol.frame_order user function.
  
  This user function was still fitting to the old design in the relax trunk.  
It has been updated for
  the frame_order_cleanup branch whereby the frame_order.pdb_model user 
function has been split up and
  the positional distribution has been replaced by the Brownian simulation 
user function
  frame_order.simulate.
........
  r26909 | bugman | 2014-12-03 10:03:50 +0100 (Wed, 03 Dec 2014) | 6 lines
  
  Better checking for the non-moving domain setup.
  
  The frame_order.pdb_model user function will now raise a RelaxError if the 
frame_order.ref_domain
  user function has not been called to set up the non-moving domain.
........
  r26910 | bugman | 2014-12-03 10:13:17 +0100 (Wed, 03 Dec 2014) | 6 lines
  
  Updated the frame_order.ref_domain user function for the current branch 
design.
  
  This user function was quite out of date.  The alignment tensor checks have 
been removed, to allow
  this to be used in the absence of base data.  And the user function 
description has been updated.
........
  r26911 | bugman | 2014-12-03 10:25:58 +0100 (Wed, 03 Dec 2014) | 3 lines
  
  Updated all frame order system tests for the frame_order.ref_domain user 
function requirement.
........

Modified:
    trunk/   (props changed)
    trunk/pipe_control/pymol_control.py
    trunk/specific_analyses/frame_order/data.py
    trunk/specific_analyses/frame_order/optimisation.py
    trunk/specific_analyses/frame_order/uf.py
    trunk/test_suite/system_tests/frame_order.py
    trunk/user_functions/frame_order.py
    trunk/user_functions/pymol_control.py

[This mail would be too long, it was shortened to contain the URLs only.]

Modified: trunk/pipe_control/pymol_control.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/pipe_control/pymol_control.py?rev=27958&r1=27957&r2=27958&view=diff

Modified: trunk/specific_analyses/frame_order/data.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/frame_order/data.py?rev=27958&r1=27957&r2=27958&view=diff

Modified: trunk/specific_analyses/frame_order/optimisation.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/frame_order/optimisation.py?rev=27958&r1=27957&r2=27958&view=diff

Modified: trunk/specific_analyses/frame_order/uf.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/frame_order/uf.py?rev=27958&r1=27957&r2=27958&view=diff

Modified: trunk/test_suite/system_tests/frame_order.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/frame_order.py?rev=27958&r1=27957&r2=27958&view=diff

Modified: trunk/user_functions/frame_order.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/user_functions/frame_order.py?rev=27958&r1=27957&r2=27958&view=diff

Modified: trunk/user_functions/pymol_control.py
URL: 
http://svn.gna.org/viewcvs/relax/trunk/user_functions/pymol_control.py?rev=27958&r1=27957&r2=27958&view=diff