Author: tlinnet
Date: Sun Oct 2 23:13:08 2016
New Revision: 28240
URL: http://svn.gna.org/viewcvs/relax?rev=28240&view=rev
Log:
Adding scripts to test openmpi installation and deploy in redhat.
Modified:
trunk/devel_scripts/deploy_scripts/deploy_google_computing_redhat_6_86_x64.sh
trunk/devel_scripts/deploy_scripts/deploy_google_computing_redhat_6_86_x64_upgrade_python.sh
trunk/devel_scripts/openmpi_test_install.sh
Modified:
trunk/devel_scripts/deploy_scripts/deploy_google_computing_redhat_6_86_x64.sh
URL:
http://svn.gna.org/viewcvs/relax/trunk/devel_scripts/deploy_scripts/deploy_google_computing_redhat_6_86_x64.sh?rev=28240&r1=28239&r2=28240&view=diff
==============================================================================
---
trunk/devel_scripts/deploy_scripts/deploy_google_computing_redhat_6_86_x64.sh
(original)
+++
trunk/devel_scripts/deploy_scripts/deploy_google_computing_redhat_6_86_x64.sh
Sun Oct 2 23:13:08 2016
@@ -10,10 +10,6 @@
# Install for running relax in multiple CPU mode
sudo yum -y install openmpi-devel
echo "module load openmpi-1.10-x86_64" >> $HOME/.bash_profile
- #bash --init-file <(echo 'mpirun --report-bindings -np 2 echo "hello
world"; exit')
-
- # mpi4py
- sudo yum -y install mpi4py-openmpi
# Install dependencies
sudo yum -y install numpy
@@ -26,6 +22,10 @@
wget
http://download.fedoraproject.org/pub/epel/6/x86_64/epel-release-6-8.noarch.rpm
sudo rpm -ivh epel-release-6-8.noarch.rpm
sudo yum -y install grace
+
+ # mpi4py
+ sudo yum -y install mpi4py-openmpi
+ sudo yum info mpi4py-openmpi
}
# Install python packages
Modified:
trunk/devel_scripts/deploy_scripts/deploy_google_computing_redhat_6_86_x64_upgrade_python.sh
URL:
http://svn.gna.org/viewcvs/relax/trunk/devel_scripts/deploy_scripts/deploy_google_computing_redhat_6_86_x64_upgrade_python.sh?rev=28240&r1=28239&r2=28240&view=diff
==============================================================================
---
trunk/devel_scripts/deploy_scripts/deploy_google_computing_redhat_6_86_x64_upgrade_python.sh
(original)
+++
trunk/devel_scripts/deploy_scripts/deploy_google_computing_redhat_6_86_x64_upgrade_python.sh
Sun Oct 2 23:13:08 2016
@@ -10,13 +10,8 @@
# Install for running relax in multiple CPU mode
sudo yum -y install openmpi-devel
echo "module load openmpi-1.10-x86_64" >> $HOME/.bash_profile
- #bash --init-file <(echo 'mpirun --report-bindings -np 2 echo "hello
world"; exit')
-
- # mpi4py
- sudo yum -y install mpi4py-openmpi
# Install dependencies
- sudo yum -y install numpy
sudo yum -y install scipy python-matplotlib
# For trunk checkout and graphs
@@ -28,11 +23,38 @@
sudo yum -y install grace
}
-# Install python packages
-function dopip {
- # Install python pip
- sudo easy_install pip
- sudo pip install epydoc
+# Install python
+function dopython {
+ # Install python 2.7 packages
+ sudo yum list python27\* | grep -E 'numpy|scipy|matplotlib|mpi4py'
+ sudo yum -y install python27-numpy python27-scipy
+
+ # Python 2.7 scl (short for âSoftware Collectionâ)
+ scl -l
+
+ # Instead of using a subshell, we will source dire
+ #scl enable python27 bash
+ #cat /opt/rh/python27/enable
+ source scl_source enable python27
+ echo "source scl_source enable python27" >> $HOME/.bash_profile
+
+ # Test for sudo and sourcing
+ python --version
+ sudo python --version
+ sudo -- sh -c 'source scl_source enable python27; python --version'
+
+ # Pip and packages
+ sudo -- sh -c 'source scl_source enable python27; easy_install pip'
+ pip --version
+ sudo -- sh -c 'source scl_source enable python27; pip install --upgrade
pip'
+ pip --version
+
+ # mpi4py
+ sudo -- sh -c 'source scl_source enable python27; env
MPICC=/usr/lib64/openmpi-1.10/bin/mpicc pip install mpi4py'
+ mpirun -np 2 python -c "import mpi4py; from mpi4py import MPI;
print('Mpi4py %s process %d of %d on %s.' %(mpi4py.__version__,
MPI.COMM_WORLD.Get_rank(),MPI.COMM_WORLD.Get_size(),
MPI.Get_processor_name()))"
+
+ # Install python epydoc
+ sudo -- sh -c 'source scl_source enable python27; pip install epydoc'
}
function getversions {
@@ -123,7 +145,7 @@
# Combine functions
function installandcheck {
doyum
- dopip
+ dopython
getversions
dobin
dopiplocal
Modified: trunk/devel_scripts/openmpi_test_install.sh
URL:
http://svn.gna.org/viewcvs/relax/trunk/devel_scripts/openmpi_test_install.sh?rev=28240&r1=28239&r2=28240&view=diff
==============================================================================
--- trunk/devel_scripts/openmpi_test_install.sh (original)
+++ trunk/devel_scripts/openmpi_test_install.sh Sun Oct 2 23:13:08 2016
@@ -1,34 +1,59 @@
+#!/bin/bash
+# -*- coding: UTF-8 -*-
+# Script for deploying relax on Google Cloud Computing GCC
+
echo
'http://svn.gna.org/viewcvs/*checkout*/relax/trunk/devel_scripts/openmpi_test_install.sh'
-echo '#Run this script with: $SHELL test_openmpi.sh'
+echo 'Source the commands with: source test_openmpi.sh'
echo ""
-echo "This script is to test relax and openmpi."
-echo ""
+function testopenmpi {
+ echo "This is functions to test openmpi, python and openmpi."
+ echo ""
-echo "Shell is: $SHELL"
-echo ""
+ echo "Shell is: $SHELL"
+ echo ""
-echo "> which mpirun"
-which mpirun
-echo ""
+ echo "> which mpirun"
+ which mpirun
+ echo ""
-echo "> module avail"
-module avail
-echo ""
+ echo "> module avail"
+ module avail
+ echo ""
-echo "> lscpu"
-lscpu
-echo ""
+ echo "> lscpu"
+ lscpu
+ echo ""
-echo "> mpirun --version"
-mpirun --version
-echo ""
+ echo "> mpirun --version"
+ mpirun --version
+ echo ""
-echo '> mpirun --report-bindings -np 2 echo "hello world"'
-mpirun --report-bindings -np 2 echo "hello world"
-echo ""
+ echo '> mpirun --report-bindings -np 2 echo "hello world"'
+ mpirun --report-bindings -np 2 echo "hello world"
+ echo ""
-echo "> mpirun --np 2 relax_trunk --multi='mpi4py'"
-mpirun --np 2 relax_trunk --multi='mpi4py'
-echo ""
+ A='"'
+ echo "> mpirun --report-bindings -np 2 python -c 'print $A Hello $A '"
+ mpirun --report-bindings -np 2 python -c 'print " Hello " '
+ echo ""
+ echo "> mpirun --report-bindings -np 2 python --version"
+ mpirun --report-bindings -np 2 python --version
+ echo ""
+
+ echo "> mpirun --report-bindings -np 2 /usr/bin/env python --version"
+ mpirun --report-bindings -np 2 /usr/bin/env python --version
+ echo ""
+
+ echo "Testing python, mpi4py and mpirun"
+ python --version
+ /usr/bin/env python --version
+ python -c "import mpi4py; print mpi4py.__version__"
+ mpirun -np 2 python -c "import mpi4py; from mpi4py import MPI;
print('Mpi4py %s process %d of %d on %s.' %(mpi4py.__version__,
MPI.COMM_WORLD.Get_rank(),MPI.COMM_WORLD.Get_size(),
MPI.Get_processor_name()))"
+ echo ""
+
+ #echo "> mpirun --np 2 relax --multi='mpi4py'"
+ #mpirun --np 2 relax --multi='mpi4py'
+ #echo ""
+}
r28240 - in /trunk/devel_scripts: ./ deploy_scripts/