[bug #7277] palmer.py Stage 2 error -- October 02, 2006 - 18:27

URL:
  <http://gna.org/bugs/?7277>

                 Summary: palmer.py Stage 2 error
                 Project: relax
            Submitted by: viochemist
            Submitted on: Monday 10/02/2006 at 16:27
                Category: None
                Priority: 5 - Normal
                Severity: 2 - Minor
                  Status: None
                 Privacy: Public
             Assigned to: None
         Originator Name: 
        Originator Email: 
             Open/Closed: Open
                 Release: Repository: 1.2 line
        Operating System: All systems

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Details:

Stage 1 is fixed.  This is likely a problem with reading the stage1 data (?).
 Simply using test-suite data and 'pdb'

Opening the file 'stage1.save.bz2' for reading.


Loading all the Modelfree 4 data.

relax> palmer.extract(run='m1', dir=None)
Traceback (most recent call last):
  File "relax", line 458, in ?
    Relax()
  File "relax", line 170, in __init__
    self.interpreter.run()
  File "/local/home/viochem/relax_1.2.7/prompt/interpreter.py", line 213, in
run
    run_script(intro=self.relax.intro_string, local=self.local,
script_file=self.relax.script_file, quit=1)
  File "/local/home/viochem/relax_1.2.7/prompt/interpreter.py", line 388, in
run_script
    console.interact(intro, local, script_file, quit)
  File "/local/home/viochem/relax_1.2.7/prompt/interpreter.py", line 340, in
interact_script
    execfile(script_file, local)
  File "palmer.py", line 132, in ?
    exec_stage_2(runs)
  File "palmer.py", line 72, in exec_stage_2
    palmer.extract(run=name)
  File "/local/home/viochem/relax_1.2.7/prompt/palmer.py", line 263, in
extract
    self.__relax__.generic.palmer.extract(run=run, dir=dir)
  File "/local/home/viochem/relax_1.2.7/generic_fns/palmer.py", line 573, in
extract
    row = split(self.mfout_lines[self.mfout_chi2_pos + pos])
IndexError: list index out of range






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File Attachments:


-------------------------------------------------------
Date: Monday 10/02/2006 at 16:27  Name: stage1.save.bz2  Size: 2kB   By:
viochemist

<http://gna.org/bugs/download.php?file_id=1365>

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