URL:
<http://gna.org/bugs/?7333>
Summary: Failure of the PDB related functions.
Project: relax
Submitted by: bugman
Submitted on: Saturday 10/07/2006 at 17:00
Category: None
Priority: 5 - Normal
Severity: 5 - Blocker
Status: None
Privacy: Public
Assigned to: bugman
Originator Name:
Originator Email:
Open/Closed: Open
Release: Repository: 1.3 line
Operating System: All systems
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Details:
The completion of task #3838 (https://gna.org/task/?3838) has caused three of
the tests in the relax test-suite to fail. All three are due to calls to
missing pdb functions. The test-suite result is:
The run tests:
The user function run.create()
...................................................... [ OK ]
The sequence tests:
The user function sequence.read()
................................................... [ OK ]
Loading the sequence from a PDB file
................................................ [ Failed ]
The diffusion tensor tests:
The user function diffusion_tensor.init()
........................................... [ OK ]
The user function diffusion_tensor.delete()
......................................... [ OK ]
The user function diffusion_tensor.display()
........................................ [ OK ]
The user function diffusion_tensor.copy()
........................................... [ OK ]
Angle calculation tests:
The user function angles()
.......................................................... [ Failed ]
The relaxation curve-fitting tests:
Loading of Sparky peak heights
...................................................... [ OK ]
The model-free tests:
The user function relax_data.read()
................................................. [ OK ]
Setting the CSA value through the user function value.set()
......................... [ OK ]
Setting the bond length through the user function value.set()
....................... [ OK ]
Setting both the CSA value and bond length through the user function
value.set() .... [ OK ]
Selecting model m4 with parameters {S2, te, Rex} using
model_free.select_model() .... [ OK ]
Creating model m4 with parameters {S2, te, Rex} using
model_free.create_model() ..... [ OK ]
The user function results.read()
.................................................... [ OK ]
Mapping the {S2, te, Rex} chi2 space through the OpenDX user function
dx.map() ...... [ OK ]
Mapping the {theta, phi, Da} chi2 space through the OpenDX user function
dx.map() ... [ Failed ]
Mapping the {local_tm, S2, te} chi2 space through the OpenDX user
function dx.map() . [ OK ]
The reduced spectral density tests:
The user function value.set()
....................................................... [ OK ]
Spectral density calculation
........................................................ [ OK ]
The model selection tests:
AIC model selection between two diffusion tensors
................................... [ OK ]
The generic tests:
S2 difference stored in a new run.
.................................................. [ OK ]
Synopsis
................................................................................
[ Failed ]
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[bug #7333] Failure of the PDB related functions.