On 10/14/06, Alexandar Hansen <viochemist@xxxxxxxxx> wrote:
That's my bad ... I forgot to use pdb.read(....) instead of pdb( .... ).
However, Now I'm getting this traceback error for diffusion models not
local_tm:
Traceback (most recent call last):
File "relax", line 458, in ?
Relax()
File "relax", line 170, in __init__
self.interpreter.run()
File "/local/home/viochem/relax/prompt/interpreter.py",
line 213, in run
run_script(intro=self.relax.intro_string , local=self.local,
script_file=self.relax.script_file, quit=1)
File "/local/home/viochem/relax/prompt/interpreter.py",
line 388, in run_script
console.interact(intro, local, script_file, quit)
File "/local/home/viochem/relax/prompt/interpreter.py",
line 340, in interact_script
execfile(script_file, local)
File "full_analysis-sphere.py", line 437, in ?
Main()
File "full_analysis-sphere.py", line 194, in __init__
pdb.vectors(name, heteronuc=self.alex_het1 , proton=self.alex_hyd1,
res_name=self.alex_res1)
File "/local/home/viochem/relax/prompt/pdb.py", line 202,
in vectors
self.__relax__.generic.pdb.vectors(run=run,
heteronuc=heteronuc, proton=proton, res_num=res_num, res_name=res_name)
TypeError: vectors() got an unexpected keyword argument 'run'
Damn. Looks like I forgot the run argument. It's going to be good to
eliminate these things. Actually, I won't have commit access for a
while. Would you be able to replace the line:
def vectors(self, heteronuc=None, proton=None, res_num=None,
res_name=None):
with:
def vectors(self, run=None, heteronuc=None, proton=None,
res_num=None, res_name=None):
in your copy (1.3) and retest it? Thanks. Oh the file is
'generic_fns/pdb.py' and the function is near the end.
Edward
Re: [task #3838] Splitting up and redesigning the 'pdb()' user function.