[bug #7540] pdb.load() doesn't exist (?) -- October 26, 2006 - 21:31

URL:
  <http://gna.org/bugs/?7540>

                 Summary: pdb.load() doesn't exist (?)
                 Project: relax
            Submitted by: viochemist
            Submitted on: Thursday 10/26/2006 at 15:31
                Category: relax's source code
                Priority: 5 - Normal
                Severity: 2 - Minor
                  Status: None
                 Privacy: Public
             Assigned to: None
         Originator Name: 
        Originator Email: 
             Open/Closed: Open
                 Release: Repository: 1.3 line
        Operating System: All systems

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Details:

I ran into this bug in the Repository 1.3 line:

The first run of each of the models finished fine, however it was unable to
load them for the next iterations.  Here's the error I get for ellipsoid
(they're all the same though):

Traceback (most recent call last):
  File "relax", line 458, in ?
    Relax()
  File "relax", line 170, in __init__
    self.interpreter.run()
  File "/local/home/viochem/relax/prompt/interpreter.py", line 213, in run
    run_script(intro=self.relax.intro_string, local=self.local,
script_file=self.relax.script_file, quit=1)
  File "/local/home/viochem/relax/prompt/interpreter.py", line 388, in
run_script
    console.interact (intro, local, script_file, quit)
  File "/local/home/viochem/relax/prompt/interpreter.py", line 340, in
interact_script
    execfile(script_file, local)
  File "full_analysis-ellipsoid.py", line 437, in ?
    Main()
  File "full_analysis-ellipsoid.py", line 227, in __init__
    self.load_tensor()
  File "full_analysis-ellipsoid.py", line 360, in load_tensor
    results.read('tensor', 'results', self.diff_model + '/init')
  File "/local/home/viochem/relax/prompt/results.py", line 122, in read
    self.__relax__.generic.results.read(run=run, file=file, directory=dir,
format=format)
  File "/local/home/viochem/relax/generic_fns/results.py", line 132, in read
    self.read_function(run, file_data, print_flag)
  File "/local/home/viochem/relax/specific_fns/model_free.py", line 3404, in
read_columnar_results
    if self.read_columnar_pdb(print_flag):
  File "/local/home/viochem/relax/specific_fns/model_free.py", line 3256, in
read_columnar_pdb
    self.relax.generic.pdb.load(run=self.run, file=pdb, model=pdb_model,
heteronuc=pdb_heteronuc, proton=pdb_proton, calc_vectors=0, fail=0,
print_flag=print_flag)
AttributeError: PDB instance has no attribute 'load'


Alex








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