URL:
<http://gna.org/bugs/?7675>
Summary: PDB instance has no attribute 'load_seq' in saved
state
Project: relax
Submitted by: macraild
Submitted on: Wednesday 11/08/2006 at 17:23
Category: relax's source code
Priority: 5 - Normal
Severity: 3 - Normal
Status: None
Privacy: Public
Assigned to: None
Originator Name:
Originator Email:
Open/Closed: Open
Release: Other (missing version)
Operating System: None
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Details:
If I load the attached state file, then do:
pdb.create_tensor_pdb('test')
I get:
Traceback (most recent call last):
File "<console>", line 1, in ?
File "/home/chris/relax_devel/pdb_tensor/prompt/pdb.py", line 113, in
create_tensor_pdb
self.__relax__.generic.pdb.create_tensor_pdb(run=run, scale=scale,
file=file, dir=dir, force=force)
File "/home/chris/relax_devel/pdb_tensor/generic_fns/pdb.py", line 246, in
create_tensor_pdb
if not self.load_seq and not len(self.relax.data.res[self.run]):
AttributeError: PDB instance has no attribute 'load_seq'
The saved state is simply the result of the following sequence:
run.create('test','mf')
pdb.read('test', 'abp_600MHz_tensorFrame.pdb')
pdb.vectors('test')
tensor = (1.537e7, 1.087e7, 0, 0)
diffusion_tensor.init('test', tensor, param_types = 3,
spheroid_type='prolate', fixed=0)
state.save('tensor_test.state', force=1)
pdb.create_tensor_pdb('test') works after explicitly re-entering that command
sequence.
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Follow-up Comments:
-------------------------------------------------------
Date: Wednesday 11/08/2006 at 17:23 By: Chris MacRaild <Chris MacRaild>
If I load the attached state file, then do:
pdb.create_tensor_pdb('test')
I get:
Traceback (most recent call last):
File "<console>", line 1, in ?
File "/home/chris/relax_devel/pdb_tensor/prompt/pdb.py", line 113, in
create_tensor_pdb
self.__relax__.generic.pdb.create_tensor_pdb(run=run, scale=scale,
file=file, dir=dir, force=force)
File "/home/chris/relax_devel/pdb_tensor/generic_fns/pdb.py", line 246, in
create_tensor_pdb
if not self.load_seq and not len(self.relax.data.res[self.run]):
AttributeError: PDB instance has no attribute 'load_seq'
The saved state is simply the result of the following sequence:
run.create('test','mf')
pdb.read('test', 'abp_600MHz_tensorFrame.pdb')
pdb.vectors('test')
tensor = (1.537e7, 1.087e7, 0, 0)
diffusion_tensor.init('test', tensor, param_types = 3,
spheroid_type='prolate', fixed=0)
state.save('tensor_test.state', force=1)
pdb.create_tensor_pdb('test') works after explicitly re-entering that command
sequence.
_______________________________________________________
Carbon-Copy List:
CC Address | Comment
------------------------------------+-----------------------------
Available only the item webpage | Submitted the item
_______________________________________________________
File Attachments:
-------------------------------------------------------
Date: Wednesday 11/08/2006 at 17:23 Name: tensor_test.state.bz2 Size: 190kB
By: macraild
<http://gna.org/bugs/download.php?file_id=1479>
_______________________________________________________
Reply to this item at:
<http://gna.org/bugs/?7675>
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[bug #7675] PDB instance has no attribute 'load_seq' in saved state