Re: [bug #7755] modsel.py error with "eliminate" -- November 17, 2006 - 06:24

Hi,

Did you run MC simulations in the original model-free optimisations?
For debugging, would you be able to attach compressed versions of the
results files for those models?

Cheers,

Edward


On 11/17/06, Stephen Headey <NO-REPLY.INVALID-ADDRESS@xxxxxxx> wrote:
> URL:
>   <http://gna.org/bugs/?7755>
>
>                  Summary: modsel.py error with "eliminate"
>                  Project: relax
>             Submitted by: sjheadey
>             Submitted on: Friday 11/17/2006 at 05:01
>                 Category: relax's source code
>                 Severity: 4 - Important
>                 Priority: 5 - Normal
>                   Status: None
>                  Privacy: Public
>              Assigned to: None
>          Originator Name:
>         Originator Email:
>              Open/Closed: Open
>          Discussion Lock: Any
>                  Release: Repository: 1.2 line
>         Operating System: GNU/Linux
>
>     _______________________________________________________
>
> Details:
>
> Hi Edward,
>
> I've run models 0-5 without a complaint. However, when I try the selection
> script modsel.py I get the following error after the models are read. Do you
> know what is causing this? Aside from specifying models 0-5 the modsel.py
> file I'm using is unmodified.
>
> Cheers,
> Stephen Headey
>
> # m5 #
>
> relax> run.create(run='m5', run_type='mf')
>
> relax> results.read(run='m5', file='results', dir='m5', format='columnar')
> Opening the file 'm5/results' for reading.
>
> relax> eliminate(run=None, function=None, args=None)
> Traceback (most recent call last):
>   File "/usr/local/software/relax-1.2/relax", line 454, in ?
>     Relax()
>   File "/usr/local/software/relax-1.2/relax", line 166, in __init__
>     self.interpreter.run()
>   File "/usr/local/software/relax-1.2/prompt/interpreter.py", line 213, in
> run
>     run_script(intro=self.relax.intro_string, local=self.local,
> script_file=self.relax.script_file, quit=1)
>   File "/usr/local/software/relax-1.2/prompt/interpreter.py", line 388, in
> run_script
>     console.interact(intro, local, script_file, quit)
>   File "/usr/local/software/relax-1.2/prompt/interpreter.py", line 340, in
> interact_script
>     execfile(script_file, local)
>   File "modsel.py", line 20, in ?
>     eliminate()
>   File "/usr/local/software/relax-1.2/prompt/eliminate.py", line 97, in
> eliminate
>     self.relax.generic.eliminate.eliminate(run=run, function=function,
> args=args)
>   File "/usr/local/software/relax-1.2/generic_fns/eliminate.py", line 100, in
> eliminate
>     values = param_values(self.run, i, sim_index=j)
>   File "/usr/local/software/relax-1.2/specific_fns/model_free.py", line 1499,
> in get_param_values
>     self.param_vector = self.assemble_param_vector(index=index,
> sim_index=sim_index)
>   File "/usr/local/software/relax-1.2/specific_fns/model_free.py", line 156,
> in assemble_param_vector
>     param_vector.append(self.relax.data.diff[self.run].tm_sim[sim_index])
> IndexError: list index out of range
>
>
>     _______________________________________________________
>
> Follow-up Comments:
>
>
> -------------------------------------------------------
> Date: Friday 11/17/2006 at 05:01    By: Stephen Headey <Stephen Headey>
> Hi Edward,
>
> I've run models 0-5 without a complaint. However, when I try the selection
> script modsel.py I get the following error after the models are read. Do you
> know what is causing this? Aside from specifying models 0-5 the modsel.py
> file I'm using is unmodified.
>
> Cheers,
> Stephen Headey
>
> # m5 #
>
> relax> run.create(run='m5', run_type='mf')
>
> relax> results.read(run='m5', file='results', dir='m5', format='columnar')
> Opening the file 'm5/results' for reading.
>
> relax> eliminate(run=None, function=None, args=None)
> Traceback (most recent call last):
>   File "/usr/local/software/relax-1.2/relax", line 454, in ?
>     Relax()
>   File "/usr/local/software/relax-1.2/relax", line 166, in __init__
>     self.interpreter.run()
>   File "/usr/local/software/relax-1.2/prompt/interpreter.py", line 213, in
> run
>     run_script(intro=self.relax.intro_string, local=self.local,
> script_file=self.relax.script_file, quit=1)
>   File "/usr/local/software/relax-1.2/prompt/interpreter.py", line 388, in
> run_script
>     console.interact(intro, local, script_file, quit)
>   File "/usr/local/software/relax-1.2/prompt/interpreter.py", line 340, in
> interact_script
>     execfile(script_file, local)
>   File "modsel.py", line 20, in ?
>     eliminate()
>   File "/usr/local/software/relax-1.2/prompt/eliminate.py", line 97, in
> eliminate
>     self.relax.generic.eliminate.eliminate(run=run, function=function,
> args=args)
>   File "/usr/local/software/relax-1.2/generic_fns/eliminate.py", line 100, in
> eliminate
>     values = param_values(self.run, i, sim_index=j)
>   File "/usr/local/software/relax-1.2/specific_fns/model_free.py", line 1499,
> in get_param_values
>     self.param_vector = self.assemble_param_vector(index=index,
> sim_index=sim_index)
>   File "/usr/local/software/relax-1.2/specific_fns/model_free.py", line 156,
> in assemble_param_vector
>     param_vector.append(self.relax.data.diff[self.run].tm_sim[sim_index])
> IndexError: list index out of range
>
>
>
>
>
>
>
>     _______________________________________________________
>
> Reply to this item at:
>
>   <http://gna.org/bugs/?7755>
>
> _______________________________________________
>   Message sent via/by Gna!
>   http://gna.org/
>
>
> _______________________________________________
> relax (http://nmr-relax.com)
>
> This is the relax-devel mailing list
> relax-devel@xxxxxxx
>
> To unsubscribe from this list, get a password
> reminder, or change your subscription options,
> visit the list information page at
> https://mail.gna.org/listinfo/relax-devel