Hi Edward,
I got the same error message for model 5 when I ran 300 simulations, so there
must be some other factor at play, unless 300 is also not enough.
Cheers,
Steve
-----Original Message-----
From: Edward d'Auvergne [mailto:edward.dauvergne@xxxxxxxxx]
Sent: Fri 11/24/2006 9:29 PM
To: Headey, Stephen
Cc: Edward d Auvergne; relax-devel@xxxxxxx
Subject: Re: [bug #7755] modsel.py error with "eliminate" - still
happening!
Yes, I have replicated and confirmed bug #7755
(http://gna.org/bugs/?7755). I'm in the process of working out a
solution. The ZeroDivisionError is another bug I have encountered
whereby all Monte Carlo simulations have failed and have been
eliminated. Hence n, the number of Monte Carlo simulations is zero
and the error occurs. The problem here is that not enough MC
simulations have been run, but I'll fix the error message anyway.
Edward
On 11/24/06, Headey, Stephen <S.J.Headey@xxxxxxxxxxxx> wrote:
> Hi Edward,
>
> I've sorted out the corrupt data files and started again with
model-free.py. (New data files attached to bug #7755). Models 1-4 seem to run
OK. Model 5 gives the following error after MC simulations.
>
> relax> minimise(*args=('newton',), run='m5', func_tol=1e-25,
max_iterations=10000000, constraints=1, scaling=1, print_flag=1)
> Simulation 1
> Simulation 2
> Simulation 3
> Simulation 4
> Simulation 5
> Simulation 6
> Simulation 7
> Simulation 8
> Simulation 9
> Simulation 10
>
> relax> eliminate(run='m5', function=None, args=None)
>
> relax> monte_carlo.error_analysis(run='m5', prune=0.0)
> Traceback (most recent call last):
> File "/usr/local/bin/relax", line 454, in ?
> Relax()
> File "/usr/local/bin/relax", line 166, in __init__
> self.interpreter.run()
> File "/usr/local/relax/prompt/interpreter.py", line 213, in run
> run_script(intro=self.relax.intro_string, local=self.local,
script_file=self.relax.script_file, quit=1)
> File "/usr/local/relax/prompt/interpreter.py", line 388, in run_script
> console.interact(intro, local, script_file, quit)
> File "/usr/local/relax/prompt/interpreter.py", line 340, in
interact_script
> execfile(script_file, local)
> File "model-free2.py", line 57, in ?
> monte_carlo.error_analysis(name)
> File "/usr/local/relax/prompt/monte_carlo.py", line 145, in error_analysis
> self.__relax__.generic.monte_carlo.error_analysis(run=run, prune=prune)
> File "/usr/local/relax/generic_fns/monte_carlo.py", line 219, in
error_analysis
> Xav = Xsum / float(n)
> ZeroDivisionError: float division
>
>
> I also ran the modsel.py script specifying models 1-4. I still get the same
"list index out of range" error.
>
> relax> eliminate(run=None, function=None, args=None)
> Traceback (most recent call last):
> File "/usr/local/software/relax-1.2/relax", line 454, in ?
> Relax()
> File "/usr/local/software/relax-1.2/relax", line 166, in __init__
> self.interpreter.run()
> File "/usr/local/software/relax-1.2/prompt/interpreter.py", line 213, in
run
> run_script(intro=self.relax.intro_string, local=self.local,
script_file=self.relax.script_file, quit=1)
> File "/usr/local/software/relax-1.2/prompt/interpreter.py", line 388, in
run_script
> console.interact(intro, local, script_file, quit)
> File "/usr/local/software/relax-1.2/prompt/interpreter.py", line 340, in
interact_script
> execfile(script_file, local)
> File "modsel.py", line 20, in ?
> eliminate()
> File "/usr/local/software/relax-1.2/prompt/eliminate.py", line 97, in
eliminate
> self.relax.generic.eliminate.eliminate(run=run, function=function,
args=args)
> File "/usr/local/software/relax-1.2/generic_fns/eliminate.py", line 100,
in eliminate
> values = param_values(self.run, i, sim_index=j)
> File "/usr/local/software/relax-1.2/specific_fns/model_free.py", line
1499, in get_param_values
> self.param_vector = self.assemble_param_vector(index=index,
sim_index=sim_index)
> File "/usr/local/software/relax-1.2/specific_fns/model_free.py", line
223, in assemble_param_vector
> param_vector.append(self.relax.data.res[self.run][i].s2_sim[sim_index])
> IndexError: list index out of range
>
> Cheers,
> Stephen
>
> -----Original Message-----
> From: Edward d Auvergne [mailto:NO-REPLY.INVALID-ADDRESS@xxxxxxx]
> Sent: Wed 11/22/2006 5:38 AM
> To: Edward d Auvergne; Headey, Stephen; relax-devel@xxxxxxx
> Cc:
> Subject: [bug #7755] modsel.py error with "eliminate"
>
>
> Update of bug #7755 (project relax):
>
> Status: None => Confirmed
> Operating System: GNU/Linux => All systems
>
> _______________________________________________________
>
> Follow-up Comment #1:
>
> The problem here is that the Monte Carlo simulation data structures are not
> being properly recreated by the model-free results reading functions. I
> tried this using 10 Monte Carlo simultations together with the relaxation
> data attached to bug #7787 (https://gna.org/bugs/?7787). After reading the
> results files, self.relax.data.sim_number[run] was set to 1300! This is 10
> times 130 spins! Hence elements beyond the end of the Monte Carlo
simulation
> arrays (of length 10) are being accessed.
>
> _______________________________________________________
>
> Reply to this item at:
>
> <http://gna.org/bugs/?7755>
>
> _______________________________________________
> Message sent via/by Gna!
> http://gna.org/
>
>
>
>
>
Re: [bug #7755] modsel.py error with "eliminate" - still happening!