URL:
<http://gna.org/bugs/?8997>
Summary: bug in palmer.py stage 2
Project: relax
Submitted by: None
Submitted on: Wednesday 04/25/2007 at 12:36 CEST
Category: relax's source code
Severity: 3 - Normal
Priority: 5 - Normal
Status: None
Privacy: Public
Assigned to: None
Originator Name: Carl Diehl
Originator Email: carl.diehl@xxxxxxxxx
Open/Closed: Open
Discussion Lock: Any
Release: 1.2.10
Operating System: GNU/Linux
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Details:
Encountered a bug while running palmer.py with stage=2, stage=1 worked fine.
The only modifications was correcting for my system.
nuclei(heteronuc='N')
relax> state.load(file='stage1.save', dir=None)
Opening the file 'stage1.save' for reading.
Loading all the Modelfree 4 data.
relax> palmer.extract(run='m1', dir=None)
Traceback (most recent call last):
File "/home/matsl/carl/apps/relax-1.2.10//relax", line 454, in ?
Relax()
File "/home/matsl/carl/apps/relax-1.2.10//relax", line 166, in __init__
self.interpreter.run()
File "/home/matsl/carl/apps/relax-1.2.10/prompt/interpreter.py", line 213,
in run
run_script(intro=self.relax.intro_string, local=self.local,
script_file=self.relax.script_file, quit=1)
File "/home/matsl/carl/apps/relax-1.2.10/prompt/interpreter.py", line 388,
in run_script
console.interact(intro, local, script_file, quit)
File "/home/matsl/carl/apps/relax-1.2.10/prompt/interpreter.py", line 340,
in interact_script
execfile(script_file, local)
File "palmer.py", line 129, in ?
exec_stage_2(runs)
File "palmer.py", line 69, in exec_stage_2
palmer.extract(run=name)
File "/home/matsl/carl/apps/relax-1.2.10/prompt/palmer.py", line 263, in
extract
self.__relax__.generic.palmer.extract(run=run, dir=dir)
File "/home/matsl/carl/apps/relax-1.2.10/generic_fns/palmer.py", line 578,
in extract
data.chi2 = float(row[1])
IndexError: list index out of range
_______________________________________________________
File Attachments:
-------------------------------------------------------
Date: Wednesday 04/25/2007 at 12:36 CEST Name: palmer.py Size: 4kB By:
None
<http://gna.org/bugs/download.php?file_id=2270>
-------------------------------------------------------
Date: Wednesday 04/25/2007 at 12:36 CEST Name: stage1.save.bz2 Size: 3kB
By: None
<http://gna.org/bugs/download.php?file_id=2271>
_______________________________________________________
Reply to this item at:
<http://gna.org/bugs/?8997>
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[bug #8997] bug in palmer.py stage 2