Re: repository line 1.3 -- June 27, 2007 - 17:43

Hi,

The 1.3 development line is currently experiencing a massive work
over.  See the thread starting at
https://mail.gna.org/public/relax-devel/2006-10/msg00053.html for a
full description.  The last few months the development of this branch
has considerably slowed down mainly due to me moving from a PhD in
Melbourne, Australia to a postdoc in Germany (as well as Chris
MacRaild moving from Leeds, England to Australia).  But I will be
getting back to completing this redesign of relax soon.

At the moment almost everything is broken.  The reason is because a
lot of new core infrastructure has been put into place, replacing many
old methods, but that the old code does not yet use this
infrastructure and is hence broken.  There is also the writing of unit
tests which will significantly help to decrease the bug count in relax
and also allow much more flexibility for code redesign in the future.
And there are general improvements as well including a better
organisation of the code in classes vs. modules, breaking of large
files, etc. and the updating of function and method docstrings into
the Epydoc format (for the relax API documentation).  All of this
however takes time.

Even though everything is broken a new type of analysis can be added
to this line, utilising the new infrastructure (there is no choice
there anyway), but which will function perfectly independent of the
rest of the program.

Regards,

Edward



On 6/27/07, Sebastien Morin <sebastien.morin.1@xxxxxxxxx> wrote:
> Hi,
>
> I just checked out the repository line 1.3 and tried the test suite
> without success.
>
> Should the 1.3 line work or is it supposed to crash on almost every
> single test..?
>
> Please find below the error output (first 120 lines) from the test
> suite. You'll see that the error is always something like :
>
>          self.relax.generic.runs.create(self.run, 'mf')
>      AttributeError: Generic instance has no attribute 'runs'
>
> Thanks !
>
>
> Sébastien
>
>
> relax --test-suite >& error_output.log
>
> =========================
>
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/sequence.py",
> line 66, in read
>     self.relax.generic.runs.create(run, 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/sequence.py",
> line 53, in pdb
>     self.relax.generic.runs.create(run, 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/diffusion_tensor.py",
> line 107, in init
>     self.initialise_tensors()
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/diffusion_tensor.py",
> line 117, in initialise_tensors
>     self.relax.generic.runs.create('sphere', 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/diffusion_tensor.py",
> line 77, in delete
>     self.initialise_tensors()
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/diffusion_tensor.py",
> line 117, in initialise_tensors
>     self.relax.generic.runs.create('sphere', 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/diffusion_tensor.py",
> line 92, in display
>     self.initialise_tensors()
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/diffusion_tensor.py",
> line 117, in initialise_tensors
>     self.relax.generic.runs.create('sphere', 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/diffusion_tensor.py",
> line 57, in copy
>     self.initialise_tensors()
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/diffusion_tensor.py",
> line 117, in initialise_tensors
>     self.relax.generic.runs.create('sphere', 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/angles.py", line
> 40, in test
>     self.relax.interpreter._Run.create(run, 'mf')
> AttributeError: Interpreter instance has no attribute '_Run'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/relax_fit.py",
> line 56, in read_sparky
>     self.relax.interpreter._State.load(file='rx.save', dir=sys.path[-1]
> + '/test_suite/system_tests/data/curve_fitting')
>   File "/home/semor/packages/relax-1.3/prompt/state.py", line 95, in load
>     self.__relax__.generic.state.load(file=file, dir=dir)
>   File "/home/semor/packages/relax-1.3/generic_fns/state.py", line 48,
> in load
>     relax_data_store = load(file)
> ImportError: No module named main
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/model_free.py",
> line 947, in read_relax_data
>     self.relax.generic.runs.create(self.run, 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/model_free.py",
> line 1218, in set_csa
>     self.relax.generic.runs.create(self.run, 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/model_free.py",
> line 1218, in set_csa
>     self.relax.generic.runs.create(self.run, 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/model_free.py",
> line 1244, in set_csa_bond_length
>     self.relax.generic.runs.create(self.run, 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/model_free.py",
> line 1161, in select_m4
>     self.relax.generic.runs.create(self.run, 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/model_free.py",
> line 1161, in select_m4
>     self.relax.generic.runs.create(self.run, 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/model_free.py",
> line 978, in read_results
>     self.relax.interpreter._State.load(file='orig_state',
> dir=sys.path[-1] + '/test_suite/system_tests/data/model_free')
>   File "/home/semor/packages/relax-1.3/prompt/state.py", line 95, in load
>     self.__relax__.generic.state.load(file=file, dir=dir)
>   File "/home/semor/packages/relax-1.3/generic_fns/state.py", line 48,
> in load
>     relax_data_store = load(file)
> ImportError: No module named main
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/model_free.py",
> line 242, in opendx_s2_te_rex
>     self.relax.generic.runs.create(self.run, 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> Traceback (most recent call last):
>   File "/home/semor/packages/relax-1.3/test_suite/system_tests/main.py",
> line 265, in exec_tests
>     test_array[i].passed = test_array[i].test(self.run)
>   File
> "/home/semor/packages/relax-1.3/test_suite/system_tests/model_free.py",
> line 281, in opendx_theta_phi_da
>     self.relax.generic.runs.create(self.run, 'mf')
> AttributeError: Generic instance has no attribute 'runs'
> ^[[?1034hFunction intros have been enabled.
>
>
>
>
> _______________________________________________
> relax (http://nmr-relax.com)
>
> This is the relax-devel mailing list
> relax-devel@xxxxxxx
>
> To unsubscribe from this list, get a password
> reminder, or change your subscription options,
> visit the list information page at
> https://mail.gna.org/listinfo/relax-devel