URL:
<http://gna.org/bugs/?10320>
Summary: bug in model-free.py; All residues must either have
a local tm parameter or not
Project: relax
Submitted by: None
Submitted on: Tuesday 11/13/2007 at 17:57 CET
Category: relax's source code
Severity: 3 - Normal
Priority: 5 - Normal
Status: None
Privacy: Public
Assigned to: None
Originator Name: doug
Originator Email:
Open/Closed: Open
Discussion Lock: Any
Release: Repository: 1.2 line
Operating System: None
_______________________________________________________
Details:
SVN 3357
I have encountered the following bug
(https://mail.gna.org/public/relax-users/2007-10/msg00028.html) when running
the full_analysis.py script, which seems to involve the model-free.py file.
I've attached a save state file before (relax_state_before_eliminate.bz2) and
after (relax_state_20072910_155552.bz2) the error. FYI: there was difficultly
in the optimization of the oblate tensor for these data, so I stopped the
optimization and used the last calculation; this should not affect the error
reported above, as this error has been reproduced on a few other datasets.
relax> state.save(file='relax_state_20072910_155552', dir=None, force=0,
compress_type=1)
Opening the file 'relax_state_20072910_155552.bz2' for writing.
Traceback (most recent call last):
File "full_analysis.py", line 581, in ?
Main(self.relax)
File "full_analysis.py", line 296, in __init__
self.model_selection(run='final', write_flag=0)
File "full_analysis.py", line 517, in model_selection
eliminate()
File "/opt/relax/1.2/prompt/eliminate.py", line 97, in eliminate
self.relax.generic.eliminate.eliminate(run=run, function=function,
args=args)
File "/opt/relax/1.2/generic_fns/eliminate.py", line 56, in eliminate
for i in xrange(num_instances(self.run)):
File "/opt/relax/1.2/specific_fns/model_free.py", line 2595, in
num_instances
self.param_set = self.determine_param_set_type()
File "/opt/relax/1.2/specific_fns/model_free.py", line 1035, in
determine_param_set_type
raise RelaxError, "All residues must either have a local tm parameter or
not."
RelaxError: RelaxError: All residues must either have a local tm parameter or
not.
_______________________________________________________
File Attachments:
-------------------------------------------------------
Date: Tuesday 11/13/2007 at 17:57 CET Name: relax_state_before_eliminate.bz2
Size: 56kB By: None
<http://gna.org/bugs/download.php?file_id=3198>
-------------------------------------------------------
Date: Tuesday 11/13/2007 at 17:57 CET Name: relax_state_20072910_155552.bz2
Size: 56kB By: None
<http://gna.org/bugs/download.php?file_id=3199>
_______________________________________________________
Reply to this item at:
<http://gna.org/bugs/?10320>
_______________________________________________
Message sent via/by Gna!
http://gna.org/
[bug #10320] bug in model-free.py; All residues must either have a local tm parameter or not