Hi,
For the creation of this directory, this will not work for those who
do not have write access to the relax source code (i.e. installed by
the root or administrative user). A better solution is to use
'tempfile.mkdtemp'. This will put it into the default system
temporary directory (on my Linux system that's ~/tmp). It's probably
best to have setUp() call this, and tearDown() delete this. As for
passing this into the script, that's a little trickier. I would
probably go for the hack of placing the directory name (which is
returned by tempfile.mkdtemp) into the relax data store. This will
then be accessible from the script and can be passed into the
Modelfree4 user functions. The only possible issue with this is that
the partition containing the temp directory fills up, but I don't
think we have to worry about that (and tearDown() will clean up the
mess).
Regards,
Edward
On Tue, Jul 29, 2008 at 11:15 PM, <sebastien.morin.1@xxxxxxxxx> wrote:
Author: semor
Date: Tue Jul 29 23:15:27 2008
New Revision: 7026
URL: http://svn.gna.org/viewcvs/relax?rev=7026&view=rev
Log:
A temporary directory is now created for ModelFree4 output.
This directory is only created and the function for deleting it still needs
to be added.
This follows the proposal of Edward d'Auvergne at:
https://mail.gna.org/public/relax-devel/2008-07/msg00038.html (message ID:
7f080ed10807290219m18601df6nf2df7e91848a9680@xxxxxxxxxxxxxx).
Modified:
1.3/test_suite/system_tests/scripts/palmer.py
Modified: 1.3/test_suite/system_tests/scripts/palmer.py
URL:
http://svn.gna.org/viewcvs/relax/1.3/test_suite/system_tests/scripts/palmer.py?rev=7026&r1=7025&r2=7026&view=diff
==============================================================================
--- 1.3/test_suite/system_tests/scripts/palmer.py (original)
+++ 1.3/test_suite/system_tests/scripts/palmer.py Tue Jul 29 23:15:27 2008
@@ -1,7 +1,11 @@
# Script for model-free analysis using the program 'Modelfree4'.
# Python module imports.
+from os import chdir
import sys
+
+# relax module imports.
+from relax_io import mkdir_nofail
# Set the stage of analysis.
#
@@ -119,6 +123,10 @@
# Set the run name (also the name of a preset model-free model).
runs = ['m1', 'm2', 'm3']
+# Create a temporary directory for ModelFree4 outputs and move into it.
+mkdir_nofail(sys.path[-1] + '/test_suite/system_tests/data/temp_palmer')
+chdir(sys.path[-1] + '/test_suite/system_tests/data/temp_palmer')
+
# Run the stages.
exec_stage_1(runs)
exec_stage_2(runs)
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Re: r7026 - /1.3/test_suite/system_tests/scripts/palmer.py