Hi,
On a machine where Scientific Python is not installed, the output from
the system tests for relax 1.3 shows an error related to Scientific Python:
====================
relax> structure.read_pdb(file='tylers_peptide_trunc.pdb',
dir='/home/semor/relax-1.3/test_suite/shared_data/structures',
read_mol=None, set_mol_name=None, read_model=None, set_model_num=None,
parser='scientific')
Traceback (most recent call last):
File
"/home/semor/pse-4/collaborations/relax/relax-1.3/test_suite/system_tests/model_free.py",
line 1044, in test_tylers_peptide
File
"/home/semor/pse-4/collaborations/relax/relax-1.3/prompt/interpreter.py",
line 273, in run
File
"/home/semor/pse-4/collaborations/relax/relax-1.3/prompt/interpreter.py",
line 534, in run_script
File
"/home/semor/pse-4/collaborations/relax/relax-1.3/prompt/interpreter.py",
line 430, in interact_script
File
"/home/semor/relax-1.3/test_suite/system_tests/scripts/tylers_peptide.py",
line 14, in <module>
structure.read_pdb(file='tylers_peptide_trunc.pdb',
dir=DATA_PATH+'structures', parser='scientific')
File
"/home/semor/pse-4/collaborations/relax/relax-1.3/prompt/structure.py",
line 464, in read_pdb
File
"/home/semor/pse-4/collaborations/relax/relax-1.3/generic_fns/structure/main.py",
line 242, in read_pdb
File
"/home/semor/pse-4/collaborations/relax/relax-1.3/generic_fns/structure/scientific.py",
line 59, in __init__
RelaxError: RelaxError: The Scientific python PDB module
Scientific.IO.PDB could not be imported.
====================
As mentioned above, Scientific Python is not installed on this system...
I thought that Scientific Python was not required for relax 1.3 (see
http://www.nmr-relax.com/download.html)...
Is this a remnant of relax 1.2 ?
Regards,
Séb :)
--
Sébastien Morin
PhD Student
S. Gagné NMR Laboratory
Université Laval & PROTEO
Québec, Canada
A remant of relax 1.2 ?